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The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference assembly
Genomic
-
NC_018226.1 Reference assembly
- Range
-
379..6780
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
YP_006543639.1 polyprotein [Pasivirus A1]
See identical proteins and their annotated locations for YP_006543639.1
Status: PROVISIONAL
- UniProtKB/TrEMBL
-
I6YQK4
- Conserved Domains (5) summary
-
- cd00205
Location:81 → 244
- rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
- pfam00548
Location:1488 → 1661
- Peptidase_C3; 3C cysteine protease (picornain 3C)
- pfam00910
Location:1177 → 1280
- RNA_helicase; RNA helicase
- pfam06363
Location:1393 → 1457
- Picorna_P3A; Picornaviridae P3A protein
- cl02808
Location:1692 → 2126
- RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
-
YP_006546259.1 VP0
- Conserved Domains (1) summary
-
- cd00205
Location:81 → 244
- rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
-
YP_006546260.1 VP3
- Conserved Domains (1) summary
-
- cd00205
Location:79 → 236
- rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
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YP_006546261.1 VP1
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YP_006546262.1 2A1
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YP_006546263.1 2A2
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YP_006546264.1 2B
-
YP_006546265.1 2C
- Conserved Domains (1) summary
-
- pfam00910
Location:136 → 239
- RNA_helicase; RNA helicase
-
YP_006546266.1 3A
- Conserved Domains (1) summary
-
- pfam06363
Location:21 → 85
- Picorna_P3A; Picornaviridae P3A protein
-
YP_006546267.1 3B
-
YP_006546268.1 3C
- Conserved Domains (1) summary
-
- pfam00548
Location:1 → 174
- Peptidase_C3; 3C cysteine protease (picornain 3C)
-
YP_006546269.1 3D
- Conserved Domains (1) summary
-
- cl02808
Location:14 → 448
- RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...