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    B483_gp1 polyprotein [ Pasivirus A1 ]

    Gene ID: 13353439, updated on 1-Aug-2022

    Summary

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    Gene symbol
    B483_gp1
    Gene description
    polyprotein
    Locus tag
    B483_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pasivirus A1 (nat-host: Sus scrofa)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Pasivirus
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    Genomic context

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    Sequence:
    NC_018226.1 (379..6780)

    NC_018226.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_018226.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A member of a new Picornaviridae genus is shed in pig feces. Sauvage V, et al. J Virol, 2012 Sep. PMID 22787214, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein
    Names
    VP0
    VP3
    VP1
    2A1
    2A2
    2B
    2C
    3A
    3B
    3C
    3D

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_018226.1 Reference assembly

      Range
      379..6780
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_006543639.1 polyprotein [Pasivirus A1]

      See identical proteins and their annotated locations for YP_006543639.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      I6YQK4
      Conserved Domains (5) summary
      cd00205
      Location:81 → 244
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      pfam00548
      Location:1488 → 1661
      Peptidase_C3; 3C cysteine protease (picornain 3C)
      pfam00910
      Location:1177 → 1280
      RNA_helicase; RNA helicase
      pfam06363
      Location:1393 → 1457
      Picorna_P3A; Picornaviridae P3A protein
      cl02808
      Location:1692 → 2126
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

    2. YP_006546259.1 VP0

      Conserved Domains (1) summary
      cd00205
      Location:81 → 244
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    3. YP_006546260.1 VP3

      Conserved Domains (1) summary
      cd00205
      Location:79 → 236
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    4. YP_006546261.1 VP1

    5. YP_006546262.1 2A1

    6. YP_006546263.1 2A2

    7. YP_006546264.1 2B

    8. YP_006546265.1 2C

      Conserved Domains (1) summary
      pfam00910
      Location:136 → 239
      RNA_helicase; RNA helicase

    9. YP_006546266.1 3A

      Conserved Domains (1) summary
      pfam06363
      Location:21 → 85
      Picorna_P3A; Picornaviridae P3A protein

    10. YP_006546267.1 3B

    11. YP_006546268.1 3C

      Conserved Domains (1) summary
      pfam00548
      Location:1 → 174
      Peptidase_C3; 3C cysteine protease (picornain 3C)

    12. YP_006546269.1 3D

      Conserved Domains (1) summary
      cl02808
      Location:14 → 448
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
    Nucleotide Protein
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