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    TRAF6 TNF receptor associated factor 6 [ Dromaius novaehollandiae (emu) ]

    Gene ID: 112981786, updated on 19-Apr-2024

    Summary

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    Gene symbol
    TRAF6
    Gene description
    TNF receptor associated factor 6
    See related
    Ensembl:ENSDNVG00000002384
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Dromaius novaehollandiae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Casuariiformes; Dromaiidae; Dromaius
    Orthologs
    human mouse all
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    Genomic context

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    See TRAF6 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_04 current bDroNov1.hap1 (GCF_036370855.1) 5 NC_088102.1 (50332199..50353451)
    100 previous assembly droNov1 (GCF_003342905.1) Unplaced Scaffold NW_020452294.1 (2138108..2158579)

    Chromosome 5 - NC_088102.1Genomic Context describing neighboring genes Neighboring gene recombination activating 2 Neighboring gene intraflagellar transport associated protein Neighboring gene recombination activating 1 Neighboring gene proline rich 5 like Neighboring gene COMM domain containing 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tumor necrosis factor receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipopolysaccharide-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of NF-kappaB transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K63-linked ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tumor necrosis factor-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TNF receptor-associated factor 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036370855.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bDroNov1.hap1

    Genomic

    1. NC_088102.1 Reference bDroNov1.hap1

      Range
      50332199..50353451
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026097688.2 → XP_025953473.1  TNF receptor-associated factor 6

      UniProtKB/TrEMBL
      A0A7K9ATB0
      Related
      ENSDNVP00000003364.1
      Conserved Domains (4) summary
      cd03776
      Location:374 → 522
      MATH_TRAF6; Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter ...
      pfam02176
      Location:204 → 261
      zf-TRAF; TRAF-type zinc finger
      pfam11221
      Location:270 → 370
      Med21; Subunit 21 of Mediator complex
      cd16643
      Location:67 → 124
      mRING-HC-C3HC3D_TRAF6; Modified RING finger, HC subclass (C3HC3D-type), found in tumor necrosis factor (TNF) receptor-associated factor 6 (TRAF6) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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