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    D016_gp1 polyprotein [ Aydin-like pestivirus ]

    Gene ID: 13791644, updated on 18-Aug-2023

    Summary

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    Gene symbol
    D016_gp1
    Gene description
    polyprotein
    Locus tag
    D016_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Aydin-like pestivirus (strain: Aydin/04-TR, nat-host: sheep)
    Lineage
    Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Pestivirus
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    Genomic context

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    Sequence:
    NC_018713.1 (378..12065)

    NC_018713.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_018713.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Complete genome sequence of a novel pestivirus from sheep. Becher P, et al. J Virol, 2012 Oct. PMID 22997427, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    polyprotein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_018713.1 Reference assembly

      Range
      378..12065
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_006860588.1 polyprotein [Aydin-like pestivirus]

      See identical proteins and their annotated locations for YP_006860588.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0B5CTQ6, J9ZZK6
      Conserved Domains (10) summary
      cd00046
      Location:1813 → 1939
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      cd01699
      Location:3416 → 3704
      RNA_dep_RNAP; RNA_dep_RNAP: RNA-dependent RNA polymerase (RdRp) is an essential protein encoded in the genomes of all RNA containing viruses with no DNA stage. RdRp catalyzes synthesis of the RNA strand complementary to a given RNA template. RdRps of many viruses are ...
      pfam00271
      Location:1984 → 2097
      Helicase_C; Helicase conserved C-terminal domain
      pfam05550
      Location:1 → 168
      Peptidase_C53; Pestivirus Npro endopeptidase C53
      pfam05578
      Location:1587 → 1797
      Peptidase_S31; Pestivirus NS3 polyprotein peptidase S31
      pfam11889
      Location:170 → 218
      DUF3409; Domain of unknown function (DUF3409)
      pfam12387
      Location:1320 → 1519
      Peptidase_C74; Pestivirus NS2 peptidase
      pfam16329
      Location:694 → 1027
      Pestivirus_E2; Pestivirus envelope glycoprotein E2
      cl00208
      Location:296 → 354
      RNase_T2; Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf ...
      cl01133
      Location:1039 → 1278
      Na_H_Exchanger; Sodium/hydrogen exchanger family
    Protein Accession Links
    GenPept Link UniProtKB Link
    AFS63897.1

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