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    D600_gp1 ORF1a [ Astrovirus VA3 ]

    Gene ID: 13897269, updated on 16-Aug-2018

    Summary

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    Gene symbol
    D600_gp1
    Gene description
    ORF1a
    Locus tag
    D600_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Astrovirus VA3 (isolate: VA3/human/Vellore/28054/2005, nat-host: Homo sapiens)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Astroviridae; unclassified Astroviridae
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    Genomic context

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    Sequence:
    NC_019026.1 (37..2706)

    NC_019026.1Genomic Context describing neighboring genes Neighboring gene ORF1b Neighboring gene putative capsid protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_019026.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparison of novel MLB-clade, VA-clade and classic human astroviruses highlights constrained evolution of the classic human astrovirus nonstructural genes. Jiang H, et al. Virology, 2013 Feb 5. PMID 23084422, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    ORF1a

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_019026.1 Reference assembly

      Range
      37..2706
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_006905858.1 ORF1a [Astrovirus VA3]

      See identical proteins and their annotated locations for YP_006905858.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      K4P1L2
      Conserved Domains (2) summary
      COG0265
      Location:437 → 594
      DegQ; Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
      pfam13365
      Location:460 → 580
      Trypsin_2; Trypsin-like peptidase domain
    Nucleotide Protein
    Heading Accession and Version

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