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    LOC4330508 AT-hook motif nuclear-localized protein 25 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330508, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330508
    Gene description
    AT-hook motif nuclear-localized protein 25
    Locus tag
    OSNPB_020713700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1479_B12.16
    Expression
    Restricted expression toward roots before flowering (RPKM 66.5) See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (30063390..30065629, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (29571784..29574253, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein At3g26922 Neighboring gene uncharacterized LOC136355289 Neighboring gene 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like Neighboring gene RNA-binding protein 24

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables minor groove of adenine-thymine-rich DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in vegetative to reproductive phase transition of meristem IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AT-hook motif nuclear-localized protein 25
    Names
    DNA-binding protein-like
    Os02g0713700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      30063390..30065629 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772238.3 → XP_015627724.1  AT-hook motif nuclear-localized protein 25

      UniProtKB/TrEMBL
      A0A0P0VNL8, B8AHL3, Q6ZFU2
      Conserved Domains (1) summary
      pfam03479
      Location:129 → 243
      DUF296; Domain of unknown function (DUF296)
    Nucleotide Protein
    Heading Accession and Version

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