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    ACA1_157900 cleavage and polyadenylation specific factor 3like, putative [ Acanthamoeba castellanii str. Neff ]

    Gene ID: 14922968, updated on 17-May-2024

    Summary

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    Gene symbol
    ACA1_157900
    Gene description
    cleavage and polyadenylation specific factor 3like, putative
    Locus tag
    ACA1_157900
    See related
    AmoebaDB:ACA1_157900; VEuPathDB:ACA1_157900
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Acanthamoeba castellanii str. Neff (strain: Neff, culture-collection: ATCC:30010)
    Lineage
    Eukaryota; Amoebozoa; Discosea; Longamoebia; Centramoebida; Acanthamoebidae; Acanthamoeba
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    Genomic context

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    See ACA1_157900 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    12

    NW_004457611.1Genomic Context describing neighboring genes Neighboring gene ferredoxin/adrenodoxin reductase Neighboring gene RNA binding motif protein Neighboring gene leucine rich repeat domain containing protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004457611.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling. Clarke M, et al. Genome Biol, 2013 Feb 1. PMID 23375108, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in snRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cleavage and polyadenylation specific factor 3like, putative
    XP_004348506.1
    • encoded by transcript ACA1_157900A

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_004457611.1 Reference assembly

      Range
      143200..146276
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004348456.1 → XP_004348506.1  cleavage and polyadenylation specific factor 3like, putative [Acanthamoeba castellanii str. Neff]

      See identical proteins and their annotated locations for XP_004348506.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      L8HBF0
      Conserved Domains (4) summary
      smart01027
      Location:244 → 362
      Beta-Casp; Beta-Casp domain
      COG1236
      Location:3 → 433
      YSH1; RNA processing exonuclease, beta-lactamase fold, Cft2 family [Translation, ribosomal structure and biogenesis]
      pfam07521
      Location:380 → 418
      RMMBL; RNA-metabolizing metallo-beta-lactamase
      cd16291
      Location:5 → 203
      INTS11-like_MBL-fold; Integrator complex subunit 11, and related proteins; MBL-fold metallo-hydrolase domain
    Nucleotide Protein
    Heading Accession and Version

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