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    HSPG2 heparan sulfate proteoglycan 2 [ Tupaia chinensis (Chinese tree shrew) ]

    Gene ID: 102493755, updated on 10-Mar-2024

    Summary

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    Gene symbol
    HSPG2
    Gene description
    heparan sulfate proteoglycan 2
    Locus tag
    TREES_T100008817
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tupaia chinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See HSPG2 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    104
    Annotation release Status Assembly Chr Location
    102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006159616.1 (2031507..2149072)

    NW_006159616.1Genomic Context describing neighboring genes Neighboring gene chymotrypsin like elastase 3B Neighboring gene hypothetical protein Neighboring gene low density lipoprotein receptor class A domain containing 2 Neighboring gene CGG triplet repeat-binding protein 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006159616 Unplaced Scaffold Reference TupChi_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sodium taurocholate cotransporting polypeptide is a functional receptor for human hepatitis B and D virus. Yan H, et al. Elife, 2012 Nov 13. PMID 23150796, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cell adhesion molecule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    basement membrane-specific heparan sulfate proteoglycan core protein
    Names
    Basement membrane-specific heparan sulfate proteoglycan core protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TupChi_1.0

    Genomic

    1. NW_006159616.1 Reference TupChi_1.0

      Range
      2031507..2149072
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027770665.1 → XP_027626466.1  basement membrane-specific heparan sulfate proteoglycan core protein

      UniProtKB/TrEMBL
      L9L0Q8
    Nucleotide Protein
    Heading Accession and Version

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