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    LOC4328936 UPF0161 protein At3g09310 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328936, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328936
    Gene description
    UPF0161 protein At3g09310
    Locus tag
    OSNPB_020260400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4328936 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (9078753..9082414, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (9052723..9056412, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene BAG family molecular chaperone regulator 6 Neighboring gene F-box/kelch-repeat protein At3g61590 Neighboring gene uncharacterized protein At5g41620 Neighboring gene BTB/POZ domain-containing protein POB1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    UPF0161 protein At3g09310; uncharacterized protein LOC4328936
    Names
    B1178F07.30-1
    B1178F07.30-2
    OSJNBa0060K08.40-1
    OSJNBa0060K08.40-2
    Os02g0260400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      9078753..9082414 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768228.3 → XP_015623714.1  UPF0161 protein At3g09310 isoform X3

      UniProtKB/TrEMBL
      A0A0P0VH93, B8AFA6, Q6K232
      Conserved Domains (1) summary
      pfam01809
      Location:47 → 98
      Haemolytic; Haemolytic domain

    2. XM_015768227.3 → XP_015623713.1  uncharacterized protein LOC4328936 isoform X2

      UniProtKB/TrEMBL
      B8AFA6
      Conserved Domains (1) summary
      pfam01809
      Location:53 → 118
      Haemolytic; Haemolytic domain

    3. XM_015768226.3 → XP_015623712.1  uncharacterized protein LOC4328936 isoform X1

      UniProtKB/TrEMBL
      B8AFA6, Q6K231
      Conserved Domains (1) summary
      pfam01809
      Location:54 → 119
      Haemolytic; Haemolytic domain

    4. XM_066307111.1 → XP_066163208.1  UPF0161 protein At3g09310 isoform X5

    5. XM_066307110.1 → XP_066163207.1  UPF0161 protein At3g09310 isoform X4

    Nucleotide Protein
    Heading Accession and Version

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