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    LOC4329880 uncharacterized LOC4329880 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329880, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329880
    Gene description
    uncharacterized LOC4329880
    Locus tag
    OSNPB_020599100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4329880 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (23860552..23867151)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23378011..23384686)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9271042 Neighboring gene probable protein phosphatase 2C 16 Neighboring gene uncharacterized LOC107275375 Neighboring gene probable protein phosphatase 2C 17 Neighboring gene uncharacterized LOC136355270 Neighboring gene probable protein phosphatase 2C 18 Neighboring gene uncharacterized LOC107280010

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Hsp90 protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein stabilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in telomere maintenance via telomerase IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4329880
    Names
    OSJNBa0038P01.31
    Os02g0599100
    telomere length regulation protein TEL2 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      23860552..23867151
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307848.1 → XP_066163945.1  uncharacterized protein LOC4329880 isoform X1

    2. XM_015770726.3 → XP_015626212.1  uncharacterized protein LOC4329880 isoform X2

      UniProtKB/TrEMBL
      B8AF08
      Conserved Domains (1) summary
      pfam10193
      Location:637 → 747
      Telomere_reg-2; Telomere length regulation protein

    3. XM_015770724.3 → XP_015626210.1  uncharacterized protein LOC4329880 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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