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The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference assembly
Genomic
-
NC_021154.1 Reference assembly
- Range
-
350..10804
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
YP_007905734.1 polyprotein [Rodent pegivirus]
See identical proteins and their annotated locations for YP_007905734.1
Status: PROVISIONAL
- UniProtKB/TrEMBL
-
M9V357
- Conserved Domains (10) summary
-
- pfam01001
Location:2052 → 2203
- HCV_NS4b; Hepatitis C virus non-structural protein NS4b
- pfam02907
Location:1304 → 1452
- Peptidase_S29; Hepatitis C virus NS3 protease
- pfam12786
Location:443 → 591
- GBV-C_env; GB virus C genotype envelope
- pfam01538
Location:1053 → 1251
- HCV_NS2; Hepatitis C virus non-structural protein NS2
- smart00487
Location:1467 → 1603
- DEXDc; DEAD-like helicases superfamily
- cd00046
Location:1476 → 1601
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- pfam00998
Location:2920 → 3413
- RdRP_3; Viral RNA dependent RNA polymerase
- pfam08300
Location:2287 → 2349
- HCV_NS5a_1a; Hepatitis C virus non-structural 5a zinc finger domain
- pfam10101
Location:845 → 1152
- DUF2339; Predicted membrane protein (DUF2339)
- cl21455
Location:1630 → 1750
- P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
-
YP_007905973.1 putative signal peptide
-
YP_007905974.1 putative Y protein
-
YP_007905975.1 putative E1 protein
-
YP_007905976.1 putative E2 protein
- Conserved Domains (1) summary
-
- pfam12786
Location:31 → 179
- GBV-C_env; GB virus C genotype envelope
-
YP_007905977.1 putative X protein
-
YP_007905978.1 putative NS2 protein
- Conserved Domains (1) summary
-
- pfam01538
Location:21 → 219
- HCV_NS2; Hepatitis C virus non-structural protein NS2
-
YP_007905979.1 putative NS3 protein
- Conserved Domains (4) summary
-
- pfam02907
Location:31 → 179
- Peptidase_S29; Hepatitis C virus NS3 protease
- smart00487
Location:194 → 330
- DEXDc; DEAD-like helicases superfamily
- cd00046
Location:203 → 328
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- cl21455
Location:357 → 477
- P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
-
YP_007905980.1 putative NS4A protein
-
YP_007905981.1 putative NS4B protein
- Conserved Domains (1) summary
-
- pfam01001
Location:61 → 212
- HCV_NS4b; Hepatitis C virus non-structural protein NS4b
-
YP_007905982.1 putative NS5A protein
- Conserved Domains (1) summary
-
- pfam08300
Location:36 → 98
- HCV_NS5a_1a; Hepatitis C virus non-structural 5a zinc finger domain
-
YP_007905983.1 putative NS5B protein
- Conserved Domains (1) summary
-
- pfam00998
Location:3 → 496
- RdRP_3; Viral RNA dependent RNA polymerase