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    LOC4343463 thylakoid lumenal 15.0 kDa protein 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343463, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343463
    Gene description
    thylakoid lumenal 15.0 kDa protein 2, chloroplastic
    Locus tag
    OSNPB_070534000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1131_E05.106
    Expression
    Biased expression in leaves before flowering (RPKM 14.8), flower buds (RPKM 7.9) and 3 other tissues See more
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    Genomic context

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    See LOC4343463 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (21163798..21169361)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (20936081..20941627)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281715 Neighboring gene aspartic proteinase nepenthesin-1 Neighboring gene cysteine-rich receptor-like protein kinase 15 Neighboring gene uncharacterized LOC4343465 Neighboring gene cysteine-rich receptor-like protein kinase 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    thylakoid lumenal 15.0 kDa protein 2, chloroplastic
    Names
    OSJNBa0039D04.27
    Os07g0534000
    putative thylakoid lumen 15.0-kDa protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      21163798..21169361
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066312440.1 → XP_066168537.1  thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X2

    2. XM_015789533.3 → XP_015645019.1  thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1

      Conserved Domains (1) summary
      pfam04536
      Location:115 → 203
      TPM_phosphatase; TPM domain
    Nucleotide Protein
    Heading Accession and Version

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