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    LOC9266525 uncharacterized LOC9266525 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266525, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC9266525
    Gene description
    uncharacterized LOC9266525
    Locus tag
    OSNPB_060340200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1294_G12.27-1
    Expression
    Ubiquitous expression in flower buds (RPKM 3.0), flowers (RPKM 2.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (13774014..13776889, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (13589188..13592157, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356956 Neighboring gene uncharacterized LOC136356957 Neighboring gene phosphatidylinositol 4-kinase gamma 4-like Neighboring gene late embryogenesis abundant protein D-34

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC9266525
    Names
    Os06g0340200
    P0428A03.13-1
    zinc finger (C3HC4-type RING finger)-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      13774014..13776889 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026026452.2 → XP_025882237.1  uncharacterized protein LOC9266525

      UniProtKB/TrEMBL
      B8B1E4, B9FT41, Q5Z887
      Conserved Domains (2) summary
      smart00744
      Location:244 → 299
      RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins
      cd16495
      Location:245 → 298
      RING_CH-C4HC3_MARCH; RING-CH finger (C4HC3-type) [structural motif]

    RNA

    1. XR_003243021.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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