U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC4332036 plant intracellular Ras-group-related LRR protein 7-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332036, updated on 17-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4332036
    Gene description
    plant intracellular Ras-group-related LRR protein 7-like
    Locus tag
    OSNPB_030212200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    IRL7; OsIRL7; OsJ_09890
    Expression
    Broad expression in roots after flowering (RPKM 20.7), leaves after flowering (RPKM 18.9) and 5 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4332036 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (5901302..5904861)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (5853863..5857464)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene receptor kinase-like protein Xa21 Neighboring gene UDP-glucose flavonoid 3-O-glucosyltransferase 7 Neighboring gene B3 domain-containing protein Os03g0212300-like Neighboring gene SNAP25 homologous protein SNAP32-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    plant intracellular Ras-group-related LRR protein 7
    Names
    LOC_Os03g11360
    intracellular Ras-group-related LRR protein 7

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417360.1 → NP_001404289.1  plant intracellular Ras-group-related LRR protein 7

      Status: VALIDATED

      Source sequence(s)
      AK069951, CB680172, CI142602, CI345268, CI584476
      UniProtKB/Swiss-Prot
      B9F655, Q0DU21, Q10Q27
      UniProtKB/TrEMBL
      B8AQV9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      5901302..5904861
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773136.3 → XP_015628622.1  plant intracellular Ras-group-related LRR protein 7 isoform X1

      Conserved Domains (3) summary
      cd00116
      Location:38 → 213
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:46 → 68
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:90 → 159
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B9F655.1 GenPept UniProtKB/Swiss-Prot:B9F655

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials