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    RNASEH1 ribonuclease H1 [ Melopsittacus undulatus (budgerigar) ]

    Gene ID: 101874093, updated on 7-Nov-2024

    Summary

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    Gene symbol
    RNASEH1
    Gene description
    ribonuclease H1
    See related
    Ensembl:ENSMUNG00015000978
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Melopsittacus undulatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittaculidae; Melopsittacus
    Orthologs
    human mouse all
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    Genomic context

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    See RNASEH1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_11 current bMelUnd1.mat.Z (GCF_012275295.1) 3 NC_047529.1 (31495942..31503665)

    Chromosome 3 - NC_047529.1Genomic Context describing neighboring genes Neighboring gene collectin subfamily member 11 Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene ribosomal protein S7 Neighboring gene acireductone dioxygenase 1 Neighboring gene trafficking protein particle complex subunit 12

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_047529.1 Chromosome 3 Reference bMelUnd1.mat.Z

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA-DNA hybrid ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA replication, removal of RNA primer IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribonuclease H1
    NP_001272863.1
    XP_030908469.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001285934.1 → NP_001272863.1  ribonuclease H1

      Status: VALIDATED

      Source sequence(s)
      JAAVWG010000374
      UniProtKB/TrEMBL
      A0A8C6JUR3, A0A8C6JVS7, A0A8V5FIF6
      Related
      ENSMUNP00015001274.1, ENSMUNT00015001326.1
      Conserved Domains (2) summary
      cd09280
      Location:146 → 286
      RNase_HI_eukaryote_like; Eukaryotic RNase H is essential and is longer and more complex than their prokaryotic counterparts
      pfam01693
      Location:21 → 62
      Cauli_VI; Caulimovirus viroplasmin

    RefSeqs of Annotated Genomes: GCF_012275295.1-RS_2024_11

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bMelUnd1.mat.Z

    Genomic

    1. NC_047529.1 Reference bMelUnd1.mat.Z

      Range
      31495942..31503665
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031052609.1 → XP_030908469.1  ribonuclease H1 isoform X1

      UniProtKB/TrEMBL
      A0A8C6JUR3, A0A8V5FIF6
      Related
      ENSMUNP00015001259.1, ENSMUNT00015001309.1
      Conserved Domains (2) summary
      cd09280
      Location:128 → 268
      RNase_HI_eukaryote_like; Eukaryotic RNase H is essential and is longer and more complex than their prokaryotic counterparts
      pfam01693
      Location:2 → 44
      Cauli_VI; Caulimovirus viroplasmin
    Nucleotide Protein
    Heading Accession and Version

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