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    LOC102353521 high mobility group protein B3 [ Latimeria chalumnae (coelacanth) ]

    Gene ID: 102353521, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC102353521
    Gene description
    high mobility group protein B3
    See related
    Ensembl:ENSLACG00000015121
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Latimeria chalumnae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
    Also known as
    HMGB3
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    Genomic context

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    See LOC102353521 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 15 NC_088153.1 (14694443..14700154, complement)
    101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819119.1 (1175447..1181141)

    Chromosome 15 - NC_088153.1Genomic Context describing neighboring genes Neighboring gene vacuolar ATPase assembly factor VMA21 Neighboring gene melatonin receptor type 1C-like Neighboring gene CD99 molecule-like 2 Neighboring gene myotubularin-related protein 1 Neighboring gene myotubularin 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding, bending IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    high mobility group protein B3
    Names
    high mobility group box 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLatCha1.pri

    Genomic

    1. NC_088153.1 Reference fLatCha1.pri

      Range
      14694443..14700154 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005991851.2 → XP_005991913.1  high mobility group protein B3 isoform X2

      UniProtKB/TrEMBL
      H3B5J2
      Conserved Domains (2) summary
      pfam00505
      Location:93 → 160
      HMG_box; HMG (high mobility group) box
      cl00082
      Location:13 → 78
      HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...

    2. XM_005991849.3 → XP_005991911.1  high mobility group protein B3 isoform X1

      See identical proteins and their annotated locations for XP_005991911.1

      UniProtKB/TrEMBL
      H3B5J1
      Related
      ENSLACP00000017162.2
      Conserved Domains (2) summary
      pfam00505
      Location:117 → 184
      HMG_box; HMG (high mobility group) box
      cl00082
      Location:37 → 102
      HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...

    3. XM_064566555.1 → XP_064422625.1  high mobility group protein B3 isoform X1

      UniProtKB/TrEMBL
      H3B5J1

    4. XM_005991850.2 → XP_005991912.1  high mobility group protein B3 isoform X1

      See identical proteins and their annotated locations for XP_005991912.1

      UniProtKB/TrEMBL
      H3B5J1
      Conserved Domains (2) summary
      pfam00505
      Location:117 → 184
      HMG_box; HMG (high mobility group) box
      cl00082
      Location:37 → 102
      HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
    Nucleotide Protein
    Heading Accession and Version

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