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    LOC7456406 cold-regulated 413 plasma membrane protein 1 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7456406, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7456406
    Gene description
    cold-regulated 413 plasma membrane protein 1
    Locus tag
    POPTR_009G109800v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7456406 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 9 NC_037293.2 (9454980..9457037)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 9 NC_037293.1 (9447498..9449540)

    Chromosome 9 - NC_037293.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112328657 Neighboring gene allene oxide synthase 3 Neighboring gene probable CoA ligase CCL6 Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene RING-H2 finger protein ATL65

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cold-regulated 413 plasma membrane protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037293.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      9454980..9457037
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002313788.4 → XP_002313824.2  cold-regulated 413 plasma membrane protein 1

      See identical proteins and their annotated locations for XP_002313824.2

      UniProtKB/TrEMBL
      B9HRT9
      Conserved Domains (1) summary
      pfam05562
      Location:29 → 202
      WCOR413; Cold acclimation protein WCOR413
    Nucleotide Protein
    Heading Accession and Version

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