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    gadd45gip1 growth arrest and DNA-damage-inducible, gamma interacting protein 1 [ Danio rerio (zebrafish) ]

    Gene ID: 402803, updated on 14-Nov-2024

    Summary

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    Official Symbol
    gadd45gip1provided by ZNC
    Official Full Name
    growth arrest and DNA-damage-inducible, gamma interacting protein 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-091204-282
    See related
    Ensembl:ENSDARG00000039338 AllianceGenome:ZFIN:ZDB-GENE-091204-282
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-194e13.6
    Summary
    Predicted to be located in nucleus and ribosome. Predicted to be part of ribonucleoprotein complex. Predicted to be active in mitochondrion. Orthologous to human GADD45GIP1 (GADD45G interacting protein 1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See gadd45gip1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (14691934..14695063, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (14542134..14545253, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene tetraspanin 34b Neighboring gene zgc:158403 Neighboring gene nuclear factor I/Xb Neighboring gene uncharacterized LOC110439336 Neighboring gene NME/NM23 nucleoside diphosphate kinase 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    growth arrest and DNA damage-inducible proteins-interacting protein 1; large ribosomal subunit protein mL64

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      14691934..14695063 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001345097.7 → XP_001345133.4  large ribosomal subunit protein mL64

      UniProtKB/TrEMBL
      A0A8M1PVC0
      Related
      ENSDARP00000115136.1, ENSDART00000133850.2
      Conserved Domains (1) summary
      pfam10147
      Location:20 → 238
      CR6_interact; Growth arrest and DNA-damage-inducible proteins-interacting protein 1
    Nucleotide Protein Strain
    Heading Accession and Version

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