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The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference assembly
Genomic
-
NC_025217.1 Reference assembly
- Range
-
303..22045
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
YP_009072438.1 ORF1ab polyprotein [Bat Hp-betacoronavirus/Zhejiang2013]
See identical proteins and their annotated locations for YP_009072438.1
Status: PROVISIONAL
- UniProtKB/TrEMBL
-
A0A088DIE1
- Conserved Domains (16) summary
-
- pfam11633
Location:1478 → 1591
- SUD-M; Single-stranded poly(A) binding domain
- COG1112
Location:5835 → 6055
- DNA2; Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]
- pfam01661
Location:1204 → 1301
- Macro; Macro domain
- pfam05409
Location:3433 → 3710
- Peptidase_C30; Coronavirus endopeptidase C30
- pfam06460
Location:6950 → 7246
- NSP13; Coronavirus NSP13
- pfam06471
Location:6070 → 6663
- NSP11; NSP11
- pfam06478
Location:4548 → 4900
- Corona_RPol_N; Coronavirus RPol N-terminus
- pfam08710
Location:4285 → 4396
- nsp9; nsp9 replicase
- pfam08715
Location:1682 → 1996
- Viral_protease; Papain like viral protease
- pfam08716
Location:4004 → 4086
- nsp7; nsp7 replicase
- pfam08717
Location:4087 → 4284
- nsp8; nsp8 replicase
- pfam09401
Location:4410 → 4527
- NSP10; RNA synthesis protein NSP10
- pfam11501
Location:13 → 126
- Nsp1; Non structural protein Nsp1
- pfam16348
Location:3314 → 3402
- Corona_NSP4_C; Coronavirus nonstructural protein 4 C-terminus
- cl21455
Location:5743 → 5873
- P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
- cl22977
Location:5893 → 6046
- UvrD_C_2; UvrD-like helicase C-terminal domain
-
YP_009915659.1 ORF1a polyprotein [Bat Hp-betacoronavirus/Zhejiang2013]
Status: PROVISIONAL
- Conserved Domains (17) summary
-
- cd21467
Location:837 → 924
- Ubl1_cv_Nsp3_N-like; first ubiquitin-like (Ubl) domain located at the N-terminus of coronavirus SARS-CoV non-structural protein 3 (Nsp3) and related proteins
- cd21473
Location:2917 → 3298
- cv_Nsp4_TM; coronavirus non-structural protein 4 (Nsp4) transmembrane domain
- cd21560
Location:3711 → 4003
- betaCoV-Nsp6; betacoronavirus non-structural protein 6
- cd21516
Location:177 → 814
- cv_beta_Nsp2_SARS-like; betacoronavirus non-structural protein 2 (Nsp2) similar to SARS-CoV Nsp2, and related proteins from betacoronaviruses in the B lineage
- cd21557
Location:1200 → 1323
- Macro_X_Nsp3-like; X-domain of viral non-structural protein 3 and related macrodomains
- cd21563
Location:1477 → 1598
- Macro_cv_SUD-M_Nsp3-like; SUD-M macrodomain of the SARS Unique Domain (SUD) of SARS-CoV non-structural protein 3 and related macrodomains
- cd21666
Location:3408 → 3704
- betaCoV_Nsp5_Mpro; betacoronavirus non-structural protein 5, also called Main protease (Mpro)
- pfam11501
Location:7 → 140
- Nsp1; Non structural protein Nsp1
- pfam16348
Location:3314 → 3402
- Corona_NSP4_C; Coronavirus nonstructural protein 4 C-terminus
- cd21827
Location:4004 → 4086
- betaCoV_Nsp7; betacoronavirus non-structural protein 7
- cd21831
Location:4090 → 4284
- betaCoV_Nsp8; betacoronavirus non-structural protein 8
- cd21901
Location:4397 → 4527
- alpha_betaCoV_Nsp10; alphacoronavirus and betacoronavirus non-structural protein 14
- cd21898
Location:4285 → 4396
- betaCoV_Nsp9; betacoronavirus non-structural protein 9
- cd21822
Location:2034 → 2147
- SARS-CoV-like_Nsp3_NAB; nucleic acid binding domain of non-structural protein 3 from Severe acute respiratory syndrome-related coronavirus and betacoronavirus in the B lineage
- cd21732
Location:1682 → 1989
- betaCoV_PLPro; betacoronavirus papain-like protease
- cd21713
Location:2353 → 2901
- TM_Y_betaCoV_Nsp3_C; C-terminus of betacoronavirus non-structural protein 3, including transmembrane and Y domains
- cl41743
Location:2170 → 2278
- betaCoV_Nsp3_betaSM; betacoronavirus-specific marker of betacoronavirus non-structural protein 3