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    S spike protein [ Bat Hp-betacoronavirus/Zhejiang2013 ]

    Gene ID: 20522555, updated on 26-Aug-2020

    Summary

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    Gene symbol
    S
    Gene description
    spike protein
    Locus tag
    NA39_gp3
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bat Hp-betacoronavirus/Zhejiang2013 (isolate: Zhejiang2013, nat-host: Hipposideros pratti)
    Lineage
    Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Hibecovirus; Bat Hp-betacoronavirus Zhejiang2013
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    Genomic context

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    Sequence:
    NC_025217.1 (23563..27516)

    NC_025217.1Genomic Context describing neighboring genes Neighboring gene ORF1a polyprotein;ORF1ab polyprotein Neighboring gene putative surface protein Neighboring gene ORF4 protein Neighboring gene envelope protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_025217.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ORF8-Related Genetic Evidence for Chinese Horseshoe Bats as the Source of Human Severe Acute Respiratory Syndrome Coronavirus. Wu Z, et al. J Infect Dis, 2016 Feb 15. PMID 26433221, Free PMC Article
    2. Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases. Wu Z, et al. ISME J, 2016 Mar. PMID 26262818, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    spike protein
    Names
    surface glycoprotein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_025217.1 Reference assembly

      Range
      23563..27516
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_009072440.1 spike protein [Bat Hp-betacoronavirus/Zhejiang2013]

      See identical proteins and their annotated locations for YP_009072440.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A088DJY6
      Conserved Domains (4) summary
      pfam01600
      Location:579 → 646
      Corona_S1; Coronavirus S1 glycoprotein
      pfam01601
      Location:748 → 1313
      Corona_S2; Coronavirus S2 glycoprotein
      pfam09408
      Location:357 → 611
      Spike_rec_bind; Spike receptor binding domain
      pfam16451
      Location:56 → 313
      Spike_NTD; Spike glycoprotein N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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