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    APOC2 apolipoprotein C2 [ Otolemur garnettii (small-eared galago) ]

    Gene ID: 100956226, updated on 8-Mar-2024

    Summary

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    Gene symbol
    APOC2
    Gene description
    apolipoprotein C2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Otolemur garnettii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
    Also known as
    Apo-CII; ApoC-II
    Orthologs
    human mouse all
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    Genomic context

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    See APOC2 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852547.1 (2166514..2168637)

    NW_003852547.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene apolipoprotein C4 Neighboring gene CLPTM1 regulator of GABA type A receptor forward trafficking Neighboring gene RELB proto-oncogene, NF-kB subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003852547 Unplaced Scaffold Reference OtoGar3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables lipoprotein lipase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chylomicron remnant clearance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in high-density lipoprotein particle clearance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of very-low-density lipoprotein particle clearance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of lipoprotein lipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of phospholipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of phospholipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chylomicron IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of intermediate-density lipoprotein particle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of low-density lipoprotein particle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of spherical high-density lipoprotein particle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of very-low-density lipoprotein particle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    apolipoprotein C-II

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference OtoGar3

    Genomic

    1. NW_003852547.1 Reference OtoGar3

      Range
      2166514..2168637
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023518944.1 → XP_023374712.1  apolipoprotein C-II isoform X2

      Conserved Domains (1) summary
      pfam05355
      Location:33 → 108
      Apo-CII; Apolipoprotein C-II

    2. XM_012811215.2 → XP_012666669.1  apolipoprotein C-II isoform X1

      Conserved Domains (1) summary
      pfam05355
      Location:34 → 109
      Apo-CII; Apolipoprotein C-II

    3. XM_003799499.3 → XP_003799547.1  apolipoprotein C-II isoform X3

      See identical proteins and their annotated locations for XP_003799547.1

      UniProtKB/Swiss-Prot
      P0DMN9
      Conserved Domains (1) summary
      pfam05355
      Location:24 → 99
      Apo-CII; Apolipoprotein C-II
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0DMN9.1 GenPept UniProtKB/Swiss-Prot:P0DMN9

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