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    LOC100242450 leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1 [ Vitis vinifera (wine grape) ]

    Gene ID: 100242450, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100242450
    Gene description
    leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1
    Locus tag
    VIT_00035611001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100242450 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 4 NC_081808.1 (2683513..2687785)
    102 previous assembly 12X (GCF_000003745.3) 4 NC_012010.3 (2681329..2685604)

    Chromosome 4 - NC_081808.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100252682 Neighboring gene uncharacterized LOC109122487 Neighboring gene homeobox-leucine zipper protein ATHB-15 Neighboring gene uncharacterized LOC100254144

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1
    Names
    probably inactive leucine-rich repeat receptor-like protein kinase At2g25790

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081808.1 Reference ASM3070453v1 Primary Assembly

      Range
      2683513..2687785
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010650185.3 → XP_010648487.1  leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1

      See identical proteins and their annotated locations for XP_010648487.1

      UniProtKB/TrEMBL
      A0A438C213, D7SU88
      Conserved Domains (5) summary
      PLN00113
      Location:1 → 967
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd00116
      Location:188 → 463
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:119 → 140
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:29 → 66
      LRRNT_2; Leucine rich repeat N-terminal domain
      cl21453
      Location:695 → 949
      PKc_like; Protein Kinases, catalytic domain

    2. XM_002281097.4 → XP_002281133.1  leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1

      See identical proteins and their annotated locations for XP_002281133.1

      UniProtKB/TrEMBL
      A0A438C213, D7SU88
      Conserved Domains (5) summary
      PLN00113
      Location:1 → 967
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd00116
      Location:188 → 463
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:119 → 140
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:29 → 66
      LRRNT_2; Leucine rich repeat N-terminal domain
      cl21453
      Location:695 → 949
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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