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    pigo.L phosphatidylinositol glycan anchor biosynthesis class O L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 444225, updated on 11-Apr-2024

    Summary

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    Official Symbol
    pigo.L
    Official Full Name
    phosphatidylinositol glycan anchor biosynthesis class O L homeolog
    Primary source
    Xenbase:XB-GENE-5945147
    Locus tag
    XELAEV_18008523mg
    See related
    EnsemblRapid:ENSXLAG00005001407
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    pigo
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    Genomic context

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    See pigo.L in Genome Data Viewer
    Location:
    chromosome: 1L
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (228980889..228999340)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (215539902..215558298)

    Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene kinesin family member 24 L homeolog Neighboring gene ubiquitin associated protein 1 L homeolog Neighboring gene kinesin family member 27 S homeolog Neighboring gene von Willebrand factor A domain containing 5A, gene 2 L homeolog Neighboring gene PHD finger protein 24 L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC80777

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables mannose-ethanolamine phosphotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within GPI anchor biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    phosphatidylinositol glycan anchor biosynthesis class O L homeolog
    Names
    GPI ethanolamine phosphate transferase 3
    phosphatidylinositol glycan anchor biosynthesis, class O

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001092329.1 → NP_001085798.1  phosphatidylinositol glycan anchor biosynthesis class O L homeolog

      See identical proteins and their annotated locations for NP_001085798.1

      Status: PROVISIONAL

      Source sequence(s)
      BC073359
      UniProtKB/TrEMBL
      A0A974I6B5, Q6GNZ1
      Related
      ENSXLAP00005004268.1, ENSXLAT00005004334.1
      Conserved Domains (2) summary
      COG1524
      Location:36 → 282
      Npp1; Predicted pyrophosphatase or phosphodiesterase, AlkP superfamily [General function prediction only]
      cd16023
      Location:63 → 338
      GPI_EPT_3; GPI ethanolamine phosphate transferase 3, PIG-O

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      228980889..228999340
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041580255.1 → XP_041436189.1  phosphatidylinositol glycan anchor biosynthesis class O L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J1M3B3, A0A974I6B5
      Related
      ENSXLAP00005004266.1, ENSXLAT00005004332.1
      Conserved Domains (1) summary
      cd16023
      Location:63 → 338
      GPI_EPT_3; GPI ethanolamine phosphate transferase 3, PIG-O
    Nucleotide Protein Strain
    Heading Accession and Version

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