SOD1 superoxide dismutase 1 [Capra hircus (goat)] - Gene

Summary

Gene symbol: SOD1
Gene description: superoxide dismutase 1
See related: EnsemblRapid:ENSCHIG00000014496
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Capra hircus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
102	current	ASM170441v1 (GCF_001704415.1)	1	NC_030808.1 (2298761..2307035, complement)
101	previous assembly	CHIR_1.0 (GCF_000317765.1)	1	NC_022293.1 (3156955..3161474, complement)

Chromosome 1 - NC_030808.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

Sod1 (e-PCR), detects polymorphism
- UniSTS:144477

SOD1 (e-PCR), detects polymorphism
- UniSTS:264864

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables copper ion binding	IEA Inferred from Electronic Annotation more info	PubMed
enables superoxide dismutase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in removal of superoxide radicals	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytosol	IEA Inferred from Electronic Annotation more info	PubMed
located_in mitochondrion	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed
located_in peroxisome	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: superoxide dismutase [Cu-Zn]

Names: superoxide dismutase 1, soluble

NP_001272479.1

EC 1.15.1.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001285550.1 → NP_001272479.1 superoxide dismutase [Cu-Zn]

See identical proteins and their annotated locations for NP_001272479.1

Status: PROVISIONAL

Source sequence(s)

AB201469

UniProtKB/Swiss-Prot

Q5FB29

UniProtKB/TrEMBL

A0A452EM32

Related

ENSCHIP00000012974.2, ENSCHIT00000020765.2

Conserved Domains (1) summary

cd00305
Location:3 → 145

Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...