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    LOC4339472 probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339472, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4339472
    Gene description
    probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL7
    Locus tag
    OSNPB_050541200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LOGL7; OsJ_19391; OJ1362_G11.10
    Expression
    Ubiquitous expression in flowers (RPKM 16.1), roots before flowering (RPKM 14.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (26986274..26988702)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (26868282..26870584)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene pathogen-associated molecular patterns-induced protein A70 Neighboring gene protein IQ-DOMAIN 6 Neighboring gene Transcription factor LATE FLOWERING Neighboring gene uncharacterized LOC4339473

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing N-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytokinin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL7
    Names
    LOC_Os05g46360
    Protein LONELY GUY-like 7
    NP_001407786.1
    XP_015640405.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420857.1 → NP_001407786.1  probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL7

      Status: VALIDATED

      Source sequence(s)
      AU070452, CF304660, CI430857, CI655789, CV720774
      UniProtKB/TrEMBL
      A2Y708

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      26986274..26988702
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784919.3 → XP_015640405.1  probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL7 isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0WPT5, Q5TKP8
      UniProtKB/TrEMBL
      A2Y708
      Conserved Domains (1) summary
      pfam03641
      Location:64 → 191
      Lysine_decarbox; Possible lysine decarboxylase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5TKP8.1 GenPept UniProtKB/Swiss-Prot:Q5TKP8

    Gene LinkOut

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