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    AT4G32910 nuclear pore complex Nup85-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829427, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT4G32910
    Gene description
    nuclear pore complex Nup85-like protein
    Primary source
    Araport:AT4G32910
    Locus tag
    AT4G32910
    See related
    TAIR:AT4G32910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See AT4G32910 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    18
    Sequence:
    Chromosome: 4; NC_003075.7 (15881245..15885518)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene GATA transcription factor 9 Neighboring gene Peptidyl-tRNA hydrolase II (PTH2) family protein Neighboring gene glutamyl-tRNA(Gln) amidotransferase subunit C Neighboring gene glycine-rich protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress. Zhu Y, et al. PLoS Genet, 2017 Dec. PMID 29232718, Free PMC Article
    2. Nucleocytoplasmic trafficking is essential for BAK1- and BKK1-mediated cell-death control. Du J, et al. Plant J, 2016 Feb. PMID 26775605
    3. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_119444.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA export from nucleus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to abscisic acid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nuclear pore complex Nup85-like protein
    NP_567908.1
    • CONTAINS InterPro DOMAIN/s: Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15881245..15885518
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119444.4 → NP_567908.1  nuclear pore complex Nup85-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567908.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RXH2, Q9ASW9
      UniProtKB/TrEMBL
      A0A178V2H2, A0A5S9XY33, A0A7G2F5J0
      Conserved Domains (1) summary
      pfam07575
      Location:73 → 677
      Nucleopor_Nup85; Nup85 Nucleoporin
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RXH2.1

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