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    LOC4328306 probable protein phosphatase 2C 10 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328306, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4328306
    Gene description
    probable protein phosphatase 2C 10
    Locus tag
    OSNPB_020149800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsPP2C10
    Expression
    Ubiquitous expression in roots after flowering (RPKM 49.6), leaves after flowering (RPKM 42.6) and 6 other tissues See more
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    Genomic context

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    See LOC4328306 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (2752210..2755565)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (2744214..2747432)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene serrate RNA effector molecule Neighboring gene exocyst complex component EXO70A1 Neighboring gene putative homeobox-leucine zipper protein HOX26 Neighboring gene uncharacterized LOC112937930

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cation binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-threonine dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable protein phosphatase 2C 10
    Names
    LOC_Os02g05630
    OSJNBa0050G13.3
    putative protein phosphatase 2C
    NP_001396253.1
    XP_025878969.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409324.1 → NP_001396253.1  probable protein phosphatase 2C 10

      Status: VALIDATED

      Source sequence(s)
      CA998987, CB648479, CI442758, CI708559, D39634
      UniProtKB/Swiss-Prot
      A0A0P0VER0, Q67UX7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      2752210..2755565
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026023184.2 → XP_025878969.1  probable protein phosphatase 2C 10 isoform X1

      UniProtKB/TrEMBL
      B8AHS3, B9F2R0
      Conserved Domains (1) summary
      cd00143
      Location:101 → 348
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q67UX7.1 GenPept UniProtKB/Swiss-Prot:Q67UX7

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