VSTM1 V-set and transmembrane domain containing 1 [Homo sapiens (human)] - Gene

Summary

Official Symbol: VSTM1provided by HGNC
Official Full Name: V-set and transmembrane domain containing 1provided by HGNC
Primary source: HGNC:HGNC:29455
See related: Ensembl:ENSG00000189068 MIM:616804; AllianceGenome:HGNC:29455
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: SIRL1; SIRL-1; UNQ3033
Summary: Predicted to enable cytokine activity. Predicted to be involved in immune response-regulating signaling pathway. Predicted to be located in extracellular space and membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Oct 2024]
Expression: Restricted expression toward bone marrow (RPKM 28.7) See more
Orthologs: all
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Genomic context

Location:: 19q13.42

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	19	NC_000019.10 (54040825..54063897, complement)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	19	NC_060943.1 (57119327..57142392, complement)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	19	NC_000019.9 (54544079..54567151, complement)

Chromosome 19 - NC_000019.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

New insights into the role of the immune inhibitory receptor VSTM1 in autoimmune disease.
Title: New insights into the role of the immune inhibitory receptor VSTM1 in autoimmune disease.
Oxidized galectin-1 in SLE fails to bind the inhibitory receptor VSTM1 and increases reactive oxygen species levels in neutrophils.
Title: Oxidized galectin-1 in SLE fails to bind the inhibitory receptor VSTM1 and increases reactive oxygen species levels in neutrophils.
VSTM1-v2 does not drive human Th17 cell differentiation: A replication study.
Title: VSTM1-v2 does not drive human Th17 cell differentiation: A replication study.
Recognition of S100 proteins by Signal Inhibitory Receptor on Leukocytes-1 negatively regulates human neutrophils.
Title: Recognition of S100 proteins by Signal Inhibitory Receptor on Leukocytes-1 negatively regulates human neutrophils.
Signal Inhibitory Receptor on Leukocytes-1 is highly expressed on lung monocytes, but absent on mononuclear phagocytes in skin and colon.
Title: Signal Inhibitory Receptor on Leukocytes-1 is highly expressed on lung monocytes, but absent on mononuclear phagocytes in skin and colon.
Signal inhibitory receptor on leukocytes (SIRL)-1 and leukocyte- associated immunoglobulin-like receptor (LAIR)-1 regulate neutrophil function in infants.
Title: Signal inhibitory receptor on leukocytes (SIRL)-1 and leukocyte- associated immunoglobulin-like receptor (LAIR)-1 regulate neutrophil function in infants.
VSTM1 rs612529T is associated with a complete demethylation of the VSTM1 promoter and allele-specific upregulation of SIRL-1 expression in monocytes.
Title: A functional SNP associated with atopic dermatitis controls cell type-specific methylation of the VSTM1 gene locus.
findings show that SIRL-1 attenuates neutrophil extracellular traps (NET) release by neutrophils in response to distinct triggers, including opsonized Staphylococcus aureus and inflammatory danger signals; define SIRL-1 as an intervention point of benefit to suppress neutrophil extracellular trap formation in disease while preserving intracellular antimicrobial defense
Title: Signal Inhibitory Receptor on Leukocytes-1 Limits the Formation of Neutrophil Extracellular Traps, but Preserves Intracellular Bacterial Killing.
VSTM1-v2 might be a biomarker of rheumatoid arthritis (RA) and a novel factor in the pathogenesis of RA.
Title: Expression of VSTM1-v2 Is Increased in Peripheral Blood Mononuclear Cells from Patients with Rheumatoid Arthritis and Is Correlated with Disease Activity.
we report a potential leukocyte differentiation antigen gene VSTM1 (V-set and transmembrane domain-containing 1) that was downregulated in bone marrow cells from leukemia patients and exhibited a higher degree of promoter methylation
Title: VSTM-v1, a potential myeloid differentiation antigen that is downregulated in bone marrow cells from myeloid leukemia patients.

Submit: New GeneRIF Correction See all GeneRIFs (13)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

ECD23675 (e-PCR)
- UniSTS:304659

ECD17769 (e-PCR)
- UniSTS:298781

ECD21630 (e-PCR)
- UniSTS:302624

ECD17545 (e-PCR)
- UniSTS:298557

ECD17568 (e-PCR)
- UniSTS:298580

ECD14773 (e-PCR)
- UniSTS:295793

ECD16826 (e-PCR)
- UniSTS:297841

NoName (e-PCR)
- UniSTS:484229

stSG605740 (e-PCR)
- UniSTS:447891

stSG605741 (e-PCR)
- UniSTS:447892

stSG605742 (e-PCR)
- UniSTS:447893

stSG605743 (e-PCR)
- UniSTS:447894

stSG605744 (e-PCR)
- UniSTS:447895

stSG605746 (e-PCR)
- UniSTS:447896

stSG605747 (e-PCR)
- UniSTS:447897

REN91356 (e-PCR)
- UniSTS:416154

stSG605748 (e-PCR)
- UniSTS:447898

REN91357 (e-PCR)
- UniSTS:416155

stSG605749 (e-PCR)
- UniSTS:447899

REN91358 (e-PCR)
- UniSTS:416156

stSG605752 (e-PCR)
- UniSTS:447900

REN91359 (e-PCR)
- UniSTS:416157

stSG605753 (e-PCR)
- UniSTS:447901

REN91360 (e-PCR)
- UniSTS:416158

stSG605754 (e-PCR)
- UniSTS:447902

REN91361 (e-PCR)
- UniSTS:416159

stSG605755 (e-PCR)
- UniSTS:447903

REN91362 (e-PCR)
- UniSTS:416160

stSG605756 (e-PCR)
- UniSTS:447904

REN91363 (e-PCR)
- UniSTS:416161

REN91364 (e-PCR)
- UniSTS:416162

REN91365 (e-PCR)
- UniSTS:416163

REN91366 (e-PCR)
- UniSTS:416164

REN91367 (e-PCR)
- UniSTS:416165

REN91368 (e-PCR)
- UniSTS:416166

REN91369 (e-PCR)
- UniSTS:416167

REN91370 (e-PCR)
- UniSTS:416168

REN91371 (e-PCR)
- UniSTS:416169

REN91372 (e-PCR)
- UniSTS:416170

REN91373 (e-PCR)
- UniSTS:416171

REN91374 (e-PCR)
- UniSTS:416172

REN91375 (e-PCR)
- UniSTS:416173

REN91376 (e-PCR)
- UniSTS:416174

REN91377 (e-PCR)
- UniSTS:416175

REN91378 (e-PCR)
- UniSTS:416176

REN91379 (e-PCR)
- UniSTS:416177

REN91380 (e-PCR)
- UniSTS:416178

REN91381 (e-PCR)
- UniSTS:416179

ECD07380 (e-PCR)
- UniSTS:288435

REN91382 (e-PCR)
- UniSTS:416180

REN91383 (e-PCR)
- UniSTS:416181

REN91384 (e-PCR)
- UniSTS:416182

REN91385 (e-PCR)
- UniSTS:416183

REN91386 (e-PCR)
- UniSTS:416184

REN91387 (e-PCR)
- UniSTS:416185

REN91388 (e-PCR)
- UniSTS:416186

REN91389 (e-PCR)
- UniSTS:416187

REN91390 (e-PCR)
- UniSTS:416188

REN91391 (e-PCR)
- UniSTS:416189

REN91392 (e-PCR)
- UniSTS:416190

REN91393 (e-PCR)
- UniSTS:416191

REN91394 (e-PCR)
- UniSTS:416192

ECD14596 (e-PCR)
- UniSTS:295616

REN91395 (e-PCR)
- UniSTS:416193

REN91396 (e-PCR)
- UniSTS:416194

REN91397 (e-PCR)
- UniSTS:416195

REN91398 (e-PCR)
- UniSTS:416196

ECD17936 (e-PCR)
- UniSTS:298948

REN91399 (e-PCR)
- UniSTS:416197

REN91400 (e-PCR)
- UniSTS:416198

REN91401 (e-PCR)
- UniSTS:416199

REN91402 (e-PCR)
- UniSTS:416200

REN91403 (e-PCR)
- UniSTS:416201

REN91404 (e-PCR)
- UniSTS:416202

REN91405 (e-PCR)
- UniSTS:416203

REN91406 (e-PCR)
- UniSTS:416204

ECD18457 (e-PCR)
- UniSTS:299468

ECD13577 (e-PCR)
- UniSTS:294606

ECD10762 (e-PCR)
- UniSTS:291801

ECD16679 (e-PCR)
- UniSTS:297694

ECD19514 (e-PCR)
- UniSTS:300519

ECD18489 (e-PCR)
- UniSTS:299500

Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
enables cytokine activity	IEA Inferred from Electronic Annotation more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in immune response-regulating signaling pathway	IBA Inferred from Biological aspect of Ancestor more info
involved_in immune system process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in extracellular space	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: V-set and transmembrane domain-containing protein 1

Names: LAIR homolog; OSCAR-like transcript-1; signal inhibitory receptor on leukocytes-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001288791.2 → NP_001275720.1 V-set and transmembrane domain-containing protein 1 isoform 2

Status: VALIDATED

Description

Transcript Variant: This variant (2) lacks one exon and contains an alternate exon in the 5' coding region, which results in a frameshift and use of an alternate start codon, compared to variant 1. The encoded isoform (2) has a shorter and distinct N-terminus, compared to isoform 1.

Source sequence(s)

AC012314, AI457604, AY358542, FJ584317, FJ584320

UniProtKB/TrEMBL

A0A0G2JPS7, D2DJS6
NM_001288792.2 → NP_001275721.1 V-set and transmembrane domain-containing protein 1 isoform 3 precursor

See identical proteins and their annotated locations for NP_001275721.1

Status: VALIDATED

Description

Transcript Variant: This variant (3) lacks an in-frame exon in the central coding region, compared to variant 1. The encoded isoform (3) is shorter, compared to isoform 1.

Source sequence(s)

AI457604, AY358542, BC100943, FJ584317

Consensus CDS

CCDS74442.1

UniProtKB/Swiss-Prot

Q6UX27

Related

ENSP00000365813.1, ENST00000376626.5

Conserved Domains (2) summary

smart00410
Location:35 → 117

IG_like; Immunoglobulin like

cl11960
Location:27 → 118

Ig; Immunoglobulin domain
NM_001288793.2 → NP_001275722.1 V-set and transmembrane domain-containing protein 1 isoform 4

See identical proteins and their annotated locations for NP_001275722.1

Status: VALIDATED

Description

Transcript Variant: This variant (4) lacks three consecutive exons in the central coding region, but maintains the reading frame, compared to variant 1. The encoded isoform (4) is shorter, compared to isoform 1.

Source sequence(s)

AI457604, AY358542, FJ584319

Consensus CDS

CCDS74441.1

UniProtKB/TrEMBL

D2DJS5, F5GZW9

Related

ENSP00000444153.2, ENST00000366170.6
NM_198481.4 → NP_940883.2 V-set and transmembrane domain-containing protein 1 isoform 1 precursor

See identical proteins and their annotated locations for NP_940883.2

Status: VALIDATED

Description

Transcript Variant: This variant (1) encodes the longest isoform (1).

Source sequence(s)

AI457604, AY358542, BG189223

Consensus CDS

CCDS12872.1

UniProtKB/Swiss-Prot

B6A8C6, D2DJS3, D2DJS4, Q496B6, Q496B7, Q6UX27

Related

ENSP00000343366.2, ENST00000338372.7

Conserved Domains (2) summary

smart00410
Location:35 → 117

IG_like; Immunoglobulin like

cl11960
Location:27 → 118

Ig; Immunoglobulin domain

RNA

NR_110142.2 RNA Sequence

Status: VALIDATED

Description

Transcript Variant: This variant (5) contains an alternate internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).

Source sequence(s)

AC012314, AI457604, AY358542, FJ882051

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

NC_000019.10 Reference GRCh38.p14 Primary Assembly

Range

54040825..54063897 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_011526849.2 → XP_011525151.1 V-set and transmembrane domain-containing protein 1 isoform X6

See identical proteins and their annotated locations for XP_011525151.1

Conserved Domains (2) summary

smart00410
Location:35 → 117

IG_like; Immunoglobulin like

cl11960
Location:27 → 118

Ig; Immunoglobulin domain
XM_011526848.2 → XP_011525150.1 V-set and transmembrane domain-containing protein 1 isoform X4

See identical proteins and their annotated locations for XP_011525150.1

Conserved Domains (2) summary

smart00410
Location:35 → 117

IG_like; Immunoglobulin like

cl11960
Location:27 → 118

Ig; Immunoglobulin domain
XM_011526846.2 → XP_011525148.1 V-set and transmembrane domain-containing protein 1 isoform X2

See identical proteins and their annotated locations for XP_011525148.1

Conserved Domains (2) summary

smart00410
Location:35 → 117

IG_like; Immunoglobulin like

cl11960
Location:27 → 118

Ig; Immunoglobulin domain
XM_011526847.2 → XP_011525149.1 V-set and transmembrane domain-containing protein 1 isoform X3

See identical proteins and their annotated locations for XP_011525149.1

Conserved Domains (2) summary

smart00410
Location:35 → 117

IG_like; Immunoglobulin like

cl11960
Location:27 → 118

Ig; Immunoglobulin domain
XM_011526845.2 → XP_011525147.1 V-set and transmembrane domain-containing protein 1 isoform X1

See identical proteins and their annotated locations for XP_011525147.1

Conserved Domains (2) summary

smart00410
Location:35 → 117

IG_like; Immunoglobulin like

cl11960
Location:27 → 118

Ig; Immunoglobulin domain
XM_047438667.1 → XP_047294623.1 V-set and transmembrane domain-containing protein 1 isoform X5

Related

ENSP00000495014.1, ENST00000645936.1
XM_017026666.2 → XP_016882155.1 V-set and transmembrane domain-containing protein 1 isoform X7

UniProtKB/Swiss-Prot

Q6UX27

Related

ENSP00000401926.1, ENST00000447872.5

Conserved Domains (1) summary

cl11960
Location:27 → 118

Ig; Immunoglobulin domain

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

NW_003571054.1 Reference GRCh38.p14 ALT_REF_LOCI_1

Range

15192..38264 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_054329679.1 → XP_054185654.1 V-set and transmembrane domain-containing protein 1 isoform X6
XM_054329678.1 → XP_054185653.1 V-set and transmembrane domain-containing protein 1 isoform X4
XM_054329676.1 → XP_054185651.1 V-set and transmembrane domain-containing protein 1 isoform X2
XM_054329677.1 → XP_054185652.1 V-set and transmembrane domain-containing protein 1 isoform X3
XM_054329675.1 → XP_054185650.1 V-set and transmembrane domain-containing protein 1 isoform X1

RNA

XR_008485658.1 RNA Sequence
XR_008485657.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

NW_003571055.2 Reference GRCh38.p14 ALT_REF_LOCI_2

Range

15192..38264 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_054330163.1 → XP_054186138.1 V-set and transmembrane domain-containing protein 1 isoform X6
XM_054330161.1 → XP_054186136.1 V-set and transmembrane domain-containing protein 1 isoform X4
XM_054330159.1 → XP_054186134.1 V-set and transmembrane domain-containing protein 1 isoform X2
XM_054330160.1 → XP_054186135.1 V-set and transmembrane domain-containing protein 1 isoform X3
XM_054330158.1 → XP_054186133.1 V-set and transmembrane domain-containing protein 1 isoform X1
XM_054330162.1 → XP_054186137.1 V-set and transmembrane domain-containing protein 1 isoform X5
XM_054330164.1 → XP_054186139.1 V-set and transmembrane domain-containing protein 1 isoform X7

Reference GRCh38.p14 ALT_REF_LOCI_3

Genomic

NW_003571056.2 Reference GRCh38.p14 ALT_REF_LOCI_3

Range

15192..38264 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_054330471.1 → XP_054186446.1 V-set and transmembrane domain-containing protein 1 isoform X6
XM_054330469.1 → XP_054186444.1 V-set and transmembrane domain-containing protein 1 isoform X4
XM_054330467.1 → XP_054186442.1 V-set and transmembrane domain-containing protein 1 isoform X2
XM_054330468.1 → XP_054186443.1 V-set and transmembrane domain-containing protein 1 isoform X3
XM_054330466.1 → XP_054186441.1 V-set and transmembrane domain-containing protein 1 isoform X1
XM_054330470.1 → XP_054186445.1 V-set and transmembrane domain-containing protein 1 isoform X5
XM_054330472.1 → XP_054186447.1 V-set and transmembrane domain-containing protein 1 isoform X7

Reference GRCh38.p14 ALT_REF_LOCI_4

Genomic

NW_003571057.2 Reference GRCh38.p14 ALT_REF_LOCI_4

Range

15192..38264 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_054330724.1 → XP_054186699.1 V-set and transmembrane domain-containing protein 1 isoform X6
XM_054330722.1 → XP_054186697.1 V-set and transmembrane domain-containing protein 1 isoform X4
XM_054330720.1 → XP_054186695.1 V-set and transmembrane domain-containing protein 1 isoform X2
XM_054330721.1 → XP_054186696.1 V-set and transmembrane domain-containing protein 1 isoform X3
XM_054330719.1 → XP_054186694.1 V-set and transmembrane domain-containing protein 1 isoform X1
XM_054330723.1 → XP_054186698.1 V-set and transmembrane domain-containing protein 1 isoform X5
XM_054330725.1 → XP_054186700.1 V-set and transmembrane domain-containing protein 1 isoform X7

Reference GRCh38.p14 ALT_REF_LOCI_5

Genomic

NW_003571058.2 Reference GRCh38.p14 ALT_REF_LOCI_5

Range

15192..38264 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_054330954.1 → XP_054186929.1 V-set and transmembrane domain-containing protein 1 isoform X6
XM_054330953.1 → XP_054186928.1 V-set and transmembrane domain-containing protein 1 isoform X4
XM_054330951.1 → XP_054186926.1 V-set and transmembrane domain-containing protein 1 isoform X2
XM_054330952.1 → XP_054186927.1 V-set and transmembrane domain-containing protein 1 isoform X3
XM_054330950.1 → XP_054186925.1 V-set and transmembrane domain-containing protein 1 isoform X1

RNA

XR_008485707.1 RNA Sequence
XR_008485706.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_6

Genomic

NW_003571059.2 Reference GRCh38.p14 ALT_REF_LOCI_6

Range

15192..38264 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_054331233.1 → XP_054187208.1 V-set and transmembrane domain-containing protein 1 isoform X6
XM_054331231.1 → XP_054187206.1 V-set and transmembrane domain-containing protein 1 isoform X4
XM_054331229.1 → XP_054187204.1 V-set and transmembrane domain-containing protein 1 isoform X2
XM_054331230.1 → XP_054187205.1 V-set and transmembrane domain-containing protein 1 isoform X3
XM_054331228.1 → XP_054187203.1 V-set and transmembrane domain-containing protein 1 isoform X1
XM_054331232.1 → XP_054187207.1 V-set and transmembrane domain-containing protein 1 isoform X5
XM_054331234.1 → XP_054187209.1 V-set and transmembrane domain-containing protein 1 isoform X7

Reference GRCh38.p14 ALT_REF_LOCI_7

Genomic

NW_003571060.1 Reference GRCh38.p14 ALT_REF_LOCI_7

Range

15192..38264 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_054331508.1 → XP_054187483.1 V-set and transmembrane domain-containing protein 1 isoform X6
XM_054331506.1 → XP_054187481.1 V-set and transmembrane domain-containing protein 1 isoform X4
XM_054331504.1 → XP_054187479.1 V-set and transmembrane domain-containing protein 1 isoform X2
XM_054331505.1 → XP_054187480.1 V-set and transmembrane domain-containing protein 1 isoform X3
XM_054331503.1 → XP_054187478.1 V-set and transmembrane domain-containing protein 1 isoform X1
XM_054331507.1 → XP_054187482.1 V-set and transmembrane domain-containing protein 1 isoform X5
XM_054331509.1 → XP_054187484.1 V-set and transmembrane domain-containing protein 1 isoform X7

Reference GRCh38.p14 ALT_REF_LOCI_8

Genomic

NW_003571061.2 Reference GRCh38.p14 ALT_REF_LOCI_8

Range

15192..38264 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_054333544.1 → XP_054189519.1 V-set and transmembrane domain-containing protein 1 isoform X6
XM_054333543.1 → XP_054189518.1 V-set and transmembrane domain-containing protein 1 isoform X4
XM_054333541.1 → XP_054189516.1 V-set and transmembrane domain-containing protein 1 isoform X2
XM_054333542.1 → XP_054189517.1 V-set and transmembrane domain-containing protein 1 isoform X3
XM_054333540.1 → XP_054189515.1 V-set and transmembrane domain-containing protein 1 isoform X1

RNA

XR_008485850.1 RNA Sequence
XR_008485849.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_9

Genomic

NT_187693.1 Reference GRCh38.p14 ALT_REF_LOCI_9

Range

15192..38264 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_054333645.1 → XP_054189620.1 V-set and transmembrane domain-containing protein 1 isoform X6
XM_054333644.1 → XP_054189619.1 V-set and transmembrane domain-containing protein 1 isoform X4
XM_054333642.1 → XP_054189617.1 V-set and transmembrane domain-containing protein 1 isoform X2
XM_054333643.1 → XP_054189618.1 V-set and transmembrane domain-containing protein 1 isoform X3
XM_054333641.1 → XP_054189616.1 V-set and transmembrane domain-containing protein 1 isoform X1

RNA

XR_008485855.1 RNA Sequence
XR_008485854.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

NC_060943.1 Alternate T2T-CHM13v2.0

Range

57119327..57142392 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_054320681.1 → XP_054176656.1 V-set and transmembrane domain-containing protein 1 isoform X6
XM_054320679.1 → XP_054176654.1 V-set and transmembrane domain-containing protein 1 isoform X4
XM_054320677.1 → XP_054176652.1 V-set and transmembrane domain-containing protein 1 isoform X2
XM_054320678.1 → XP_054176653.1 V-set and transmembrane domain-containing protein 1 isoform X3
XM_054320676.1 → XP_054176651.1 V-set and transmembrane domain-containing protein 1 isoform X1
XM_054320680.1 → XP_054176655.1 V-set and transmembrane domain-containing protein 1 isoform X5
XM_054320682.1 → XP_054176657.1 V-set and transmembrane domain-containing protein 1 isoform X7