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    ZNF18 zinc finger protein 18 [ Propithecus coquereli (Coquerel's sifaka) ]

    Gene ID: 105818076, updated on 13-Mar-2024

    Summary

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    Gene symbol
    ZNF18
    Gene description
    zinc finger protein 18
    See related
    Ensembl:ENSPCOG00000024281
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Propithecus coquereli
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
    Orthologs
    human mouse all
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    Genomic context

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    See ZNF18 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012150119.1 (2075317..2096851, complement)

    NW_012150119.1Genomic Context describing neighboring genes Neighboring gene shisa family member 6 Neighboring gene dynein axonemal heavy chain 9 Neighboring gene 40S ribosomal protein SA pseudogene Neighboring gene mitogen-activated protein kinase kinase 4 Neighboring gene myocardin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_012150119.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein 18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Pcoq_1.0 Primary Assembly

    Genomic

    1. NW_012150119.1 Reference Pcoq_1.0 Primary Assembly

      Range
      2075317..2096851 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012653951.1 → XP_012509405.1  zinc finger protein 18 isoform X2

      Conserved Domains (7) summary
      smart00431
      Location:37 → 148
      SCAN; leucine rich region
      cd07765
      Location:221 → 249
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
      COG5048
      Location:403 → 547
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:464 → 484
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:434 → 456
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:37 → 125
      SCAN; SCAN domain
      pfam13465
      Location:504 → 528
      zf-H2C2_2; Zinc-finger double domain

    2. XM_012653950.1 → XP_012509404.1  zinc finger protein 18 isoform X1

      UniProtKB/TrEMBL
      A0A2K6GD95
      Related
      ENSPCOP00000024207.1, ENSPCOT00000034887.1
      Conserved Domains (7) summary
      smart00431
      Location:37 → 148
      SCAN; leucine rich region
      cd07765
      Location:221 → 249
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
      COG5048
      Location:404 → 548
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:465 → 485
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:435 → 457
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:37 → 125
      SCAN; SCAN domain
      pfam13465
      Location:505 → 529
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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