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    Tarbp2 TARBP2 subunit of RISC loading complex [ Microtus ochrogaster (prairie vole) ]

    Gene ID: 101988246, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Tarbp2
    Gene description
    TARBP2 subunit of RISC loading complex
    See related
    Ensembl:ENSMOCG00000003691
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Microtus ochrogaster
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Microtus
    Orthologs
    human mouse all
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    Genomic context

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    See Tarbp2 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current MicOch1.0 (GCF_000317375.1) 15 NC_022017.1 (1775932..1780931, complement)

    Chromosome 15 - NC_022017.1Genomic Context describing neighboring genes Neighboring gene SUMO-activating enzyme subunit 1-like Neighboring gene activating transcription factor 7 Neighboring gene mitogen-activated protein kinase kinase kinase 12 Neighboring gene small nucleolar RNA SNORA81 Neighboring gene poly(rC) binding protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_022017.1 Chromosome 15 Reference MicOch1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pre-miRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables siRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of miRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of siRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of viral transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RISC-loading complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RISC-loading complex subunit TARBP2
    Names
    TARBP2, RISC loading complex RNA binding subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Microtus ochrogaster Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MicOch1.0

    Genomic

    1. NC_022017.1 Reference MicOch1.0

      Range
      1775932..1780931 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013348649.2 → XP_013204103.1  RISC-loading complex subunit TARBP2 isoform X2

      UniProtKB/TrEMBL
      A0A8J6GW11
      Conserved Domains (2) summary
      smart00358
      Location:31 → 79
      DSRM; Double-stranded RNA binding motif
      cd00048
      Location:158 → 221
      DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...

    2. XM_005353803.3 → XP_005353860.1  RISC-loading complex subunit TARBP2 isoform X1

      UniProtKB/TrEMBL
      A0A8J6GW11
      Related
      ENSMOCP00000004450.1, ENSMOCT00000004937.1
      Conserved Domains (2) summary
      smart00358
      Location:31 → 79
      DSRM; Double-stranded RNA binding motif
      cd00048
      Location:158 → 221
      DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...

    3. XM_013348650.2 → XP_013204104.1  RISC-loading complex subunit TARBP2 isoform X3

      UniProtKB/TrEMBL
      A0A8J6GW11
      Conserved Domains (2) summary
      smart00358
      Location:10 → 58
      DSRM; Double-stranded RNA binding motif
      cd00048
      Location:137 → 200
      DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...

    4. XM_026782821.1 → XP_026638622.1  RISC-loading complex subunit TARBP2 isoform X3

      UniProtKB/TrEMBL
      A0A8J6GW11
      Conserved Domains (2) summary
      smart00358
      Location:10 → 58
      DSRM; Double-stranded RNA binding motif
      cd00048
      Location:137 → 200
      DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...

    5. XM_026782822.1 → XP_026638623.1  RISC-loading complex subunit TARBP2 isoform X3

      UniProtKB/TrEMBL
      A0A8J6GW11
      Conserved Domains (2) summary
      smart00358
      Location:10 → 58
      DSRM; Double-stranded RNA binding motif
      cd00048
      Location:137 → 200
      DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
    Nucleotide Protein
    Heading Accession and Version

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