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    LOC106155054 casein kinase I [ Lingula anatina ]

    Gene ID: 106155054, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC106155054
    Gene description
    casein kinase I
    See related
    EnsemblRapid:LOC106155054
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lingula anatina
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
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    Genomic context

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    See LOC106155054 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019774814.1 (337629..359852, complement)
    100 previous assembly LinAna1.0 (GCF_001039355.1) Unplaced Scaffold NW_013581018.1 (467907..490130, complement)

    NW_019774814.1Genomic Context describing neighboring genes Neighboring gene activating signal cointegrator 1-like Neighboring gene PCNA-associated factor Neighboring gene PCNA-associated factor-like Neighboring gene centrosomal protein of 120 kDa Neighboring gene uncharacterized LOC106155041

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization. Luo YJ, et al. Nat Commun, 2015 Sep 18. PMID 26383154, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidyl-serine phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of canonical Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    casein kinase I

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LinAna2.0 Primary Assembly

    Genomic

    1. NW_019774814.1 Reference LinAna2.0 Primary Assembly

      Range
      337629..359852 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013529662.1 → XP_013385116.1  casein kinase I isoform X3

      UniProtKB/TrEMBL
      A0A1S3HI09
      Related
      XP_013385116.1, XM_013529662.1
      Conserved Domains (2) summary
      COG0515
      Location:46 → 268
      SPS1; Serine/threonine protein kinase [Signal transduction mechanisms]
      cd14126
      Location:46 → 333
      STKc_CK1_gamma; Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1 gamma

    2. XM_013529661.1 → XP_013385115.1  casein kinase I isoform X2

      UniProtKB/TrEMBL
      A0A1S3HGC3
      Related
      XP_013385115.1, XM_013529661.1
      Conserved Domains (3) summary
      COG0515
      Location:46 → 268
      SPS1; Serine/threonine protein kinase [Signal transduction mechanisms]
      cd14126
      Location:46 → 333
      STKc_CK1_gamma; Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1 gamma
      pfam12605
      Location:333 → 413
      CK1gamma_C; Casein kinase 1 gamma C terminal

    3. XM_013529660.1 → XP_013385114.1  casein kinase I isoform X1

      UniProtKB/TrEMBL
      A0A1S3HJE9
      Related
      XP_013385114.1, XM_013529660.1
      Conserved Domains (3) summary
      COG0515
      Location:46 → 268
      SPS1; Serine/threonine protein kinase [Signal transduction mechanisms]
      cd14126
      Location:46 → 333
      STKc_CK1_gamma; Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1 gamma
      pfam12605
      Location:333 → 413
      CK1gamma_C; Casein kinase 1 gamma C terminal
    Nucleotide Protein
    Heading Accession and Version

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