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    LOC4340839 uncharacterized CRM domain-containing protein At3g25440, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340839, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4340839
    Gene description
    uncharacterized CRM domain-containing protein At3g25440, chloroplastic
    Locus tag
    OSNPB_060304500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4340839 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (11665420..11669091)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (11483057..11486820)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase I termination factor Neighboring gene GPI-anchored protein LLG1-like Neighboring gene aspartyl protease family protein At5g10770 Neighboring gene putative disease resistance protein RGA3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized CRM domain-containing protein At3g25440, chloroplastic
    Names
    Os06g0304500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      11665420..11669091
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311558.1 → XP_066167655.1  uncharacterized CRM domain-containing protein At3g25440, chloroplastic

      UniProtKB/TrEMBL
      A0A0N7KLZ6, A3BB12, Q0DCP4

    2. XM_066311559.1 → XP_066167656.1  uncharacterized CRM domain-containing protein At3g25440, chloroplastic

      UniProtKB/TrEMBL
      A0A0N7KLZ6, A3BB12, Q0DCP4

    3. XM_015788923.3 → XP_015644409.1  uncharacterized CRM domain-containing protein At3g25440, chloroplastic

      UniProtKB/TrEMBL
      A0A0N7KLZ6, A2YC37, A3BB12, Q0DCP4
      Conserved Domains (1) summary
      pfam01985
      Location:183 → 266
      CRS1_YhbY; CRS1 / YhbY (CRM) domain

    4. XM_066311557.1 → XP_066167654.1  uncharacterized CRM domain-containing protein At3g25440, chloroplastic

      UniProtKB/TrEMBL
      A0A0N7KLZ6, A3BB12, Q0DCP4
    Nucleotide Protein
    Heading Accession and Version

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