U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    AVU60_gp2 spike glycoprotein [ BtMr-AlphaCoV/SAX2011 ]

    Gene ID: 26626797, updated on 16-Aug-2018

    Summary

    Go to the top of the page Help
    Gene symbol
    AVU60_gp2
    Gene description
    spike glycoprotein
    Locus tag
    AVU60_gp2
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    BtMr-AlphaCoV/SAX2011 (isolate: BtMr-SAX2011, nat-host: Myotis ricketti)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Alphacoronavirus; unclassified Alphacoronavirus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_028811.1 (20288..24451)

    NC_028811.1Genomic Context describing neighboring genes Neighboring gene ORF1ab polyprotein Neighboring gene hypothetical protein ORF3 Neighboring gene small envelope protein Neighboring gene membrane glycoprotein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_028811.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases. Wu Z, et al. ISME J, 2016 Mar. PMID 26262818, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

    Go to the top of the page Help
    Preferred Names
    spike glycoprotein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_028811.1 Reference assembly

      Range
      20288..24451
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_009199609.1 spike glycoprotein [BtMr-AlphaCoV/SAX2011]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0U1WHD7
      Conserved Domains (3) summary
      COG0840
      Location:1005 → 1132
      Tar; Methyl-accepting chemotaxis protein [Cell motility, Signal transduction mechanisms]
      pfam01600
      Location:221 → 750
      Corona_S1; Coronavirus S1 glycoprotein
      pfam01601
      Location:758 → 1386
      Corona_S2; Coronavirus S2 glycoprotein
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.