Mus pahari (ID 53616) - Genome - NCBI

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Mus pahari (shrew mouse)
Representative genome: Mus pahari (assembly PAHARI_EIJ_v1.1)
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BLAST against Mus pahari genome, transcript, protein

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ID: 53616

Organism Overview

Mus pahari (shrew mouse)

Mus pahari RefSeq Genome

Lineage: Eukaryota[15558]; Metazoa[7784]; Chordata[3583]; Craniata[3548]; Vertebrata[3548]; Euteleostomi[3503]; Mammalia[873]; Eutheria[699]; Euarchontoglires[338]; Glires[143]; Rodentia[134]; Myomorpha[82]; Muroidea[77]; Muridae[35]; Murinae[25]; Mus[6]; Coelomys[1]; Mus pahari[1]

Mus pahari genome reference project

Summary

Assembly level:

Chromosome

Assembly:

GCA_900095145.2 PAHARI_EIJ_v1.1 scaffolds: 2,581 contigs: 133,720 N50: 29,465 L50: 22,851

BioProjects:

PRJNA387191, PRJEB14896

Whole Genome Shotgun (WGS):

INSDC: FMBV00000000.2

Statistics:

total length (Mb): 2475.01

protein count: 42226

GC%: 42.6694

NCBI Annotation Release:

Publications (limited to 20 most recent records)

Alterations in mRNA translation as a mechanism for the modification of enzyme synthesis during evolution. The ornithine decarboxylase model. Johannes G, et al. J Biol Chem 1992 May 15

Replicon Info

Loc	Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene	Pseudogene
	Chr	1	NC_034590.1	LT608296.1	172.15	44.1	4,011	-	19	309	2,674	357

	Chr	2	NC_034591.1	LT608286.1	163.94	42.4	2,445	2	20	269	1,772	389

	Chr	3	NC_034592.1	LT608290.1	164.14	42.8	3,372	1	8	305	2,234	360

	Chr	4	NC_034593.1	LT608287.1	146.49	41.2	2,035	-	34	242	1,481	336

	Chr	5	NC_034594.1	LT608292.1	167.01	41.9	2,482	-	20	267	1,641	319

	Chr	6	NC_034595.1	LT608307.1	107.15	44.4	2,125	-	3	194	1,280	180

	Chr	7	NC_034596.1	LT608288.1	113.32	42.7	1,543	1	5	198	1,079	220

	Chr	8	NC_034597.1	LT608301.1	111.41	41.9	1,549	-	13	148	1,059	231

	Chr	9	NC_034598.1	LT608291.1	92.4	42.3	1,628	-	8	148	1,098	185

	Chr	10	NC_034599.1	LT608289.1	116.91	43.4	2,469	-	8	220	1,595	268

	Chr	11	NC_034600.1	LT608304.1	77.35	40.9	703	-	1	103	576	152

	Chr	12	NC_034601.1	LT608305.1	89.02	41.3	1,484	2	1	130	912	138

	Chr	13	NC_034602.1	LT608299.1	96.7	41.6	1,344	-	-	163	888	171

	Chr	14	NC_034603.1	LT608308.1	88.92	45.2	2,792	1	44	191	1,722	143

	Chr	15	NC_034604.1	LT608295.1	82.56	41.8	1,144	-	1	127	753	177

	Chr	16	NC_034605.1	LT608294.1	69.34	43.5	1,033	-	105	95	845	138

	Chr	17	NC_034606.1	LT608298.1	68.19	43.5	1,417	-	2	121	893	139

	Chr	18	NC_034607.1	LT608302.1	59.54	43.1	1,185	-	2	92	796	134

	Chr	19	NC_034608.1	LT608297.1	89.63	43.9	1,470	-	-	129	1,012	157

	Chr	20	NC_034609.1	LT608293.1	52.12	44.6	959	-	8	82	660	82

	Chr	21	NC_034610.1	LT608306.1	55.72	43.7	1,037	1	16	74	718	132

	Chr	22	NC_034611.1	LT608303.1	50.16	40.5	580	-	2	74	466	122

	Chr	23	NC_034612.1	LT608309.1	41.9	48.0	1,066	-	6	69	649	66

	Chr	X	NC_034613.1	LT608300.1	148.38	41.2	1,519	-	4	186	1,363	490

	Un	-	.	-	50.57	40.1	834	-	14	109	1,317	443

Chromosomes

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