Genome

Rotavirus A Human Rotavirus Genome Sequencing Project for J. Craig Venter Institute (JCVI) Lineage: Viruses[32582]; Riboviria[7831]; Orthornavirae[6385]; Duplornaviricota[413]; Resentoviricetes[125]; Reovirales[125]; Sedoreoviridae[66]; Rotavirus[12]; Rotavirus A[1]

This rotavirus sequencing project at JCVI is a collaborative effort among different groups around the world to study human rotaviruses. The specific aims and the scope for each study varies but the goal is to understand the global genetic diversity of rotaviruses and their evolutionary dynamics, particularly under the selective pressures of national-scale rotavirus vaccination efforts.

Summary Sequence data:  genome assemblies: 2514; sequence reads: 3 Statistics:  median total length (Mb): 0.018034  median protein count: 11  median GC%: 31.9955 Publications (limited to 20 most recent records) Comparative In Vitro and In Vivo Studies of Porcine Rotavirus G9P[13] and Human Rotavirus Wa G1P[8]. Shao L, et al. J Virol 2016 Jan 1 Complete genomic sequence for an avian group G rotavirus from South Africa. Stucker KM, et al. Genome Announc 2015 Mar 12 Absence of genetic differences among G10P[11] rotaviruses associated with asymptomatic and symptomatic neonatal infections in Vellore, India. Libonati MH, et al. J Virol 2014 Aug Analysis of human rotaviruses from a single location over an 18-year time span suggests that protein coadaption influences gene constellations. Zhang S, et al. J Virol 2014 Sep 1 Whole-genome analyses reveals the animal origin of a rotavirus G4P[6] detected in a child with severe diarrhea. Martinez M, et al. Infect Genet Evol 2014 Oct Diversity and relationships of cocirculating modern human rotaviruses revealed using large-scale comparative genomics. McDonald SM, et al. J Virol 2012 Sep More...