Strigops habroptila (ID 75115) - Genome - NCBI

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Strigops habroptila (Kakapo)
Representative genome: Strigops habroptila (assembly bStrHab1.2.pri)
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ID: 75115

Organism Overview ; Genome Assembly and Annotation report [2] ; Organelle Annotation Report [1]

Strigops habroptila (Kakapo)

Strigops habroptilus overview

Lineage: Eukaryota[15557]; Metazoa[7782]; Chordata[3579]; Craniata[3544]; Vertebrata[3544]; Euteleostomi[3500]; Archelosauria[1076]; Archosauria[1039]; Dinosauria[1034]; Saurischia[1034]; Theropoda[1034]; Coelurosauria[1034]; Aves[1034]; Neognathae[1009]; Psittaciformes[155]; Psittacidae[133]; Strigops[1]; Strigops habroptila[1]

Summary

Sequence data:

genome assemblies: 2

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 1148.6

median protein count: 43613

median GC%: 42.0327

NCBI Annotation Release:

Publications (limited to 20 most recent records)

Complete vertebrate mitogenomes reveal widespread repeats and gene duplications. Formenti G, et al. Genome Biol 2021 Apr 29
Towards complete and error-free genome assemblies of all vertebrate species. Rhie A, et al. Nature 2021 Apr
The Genome 10K Project: a way forward. Koepfli KP, et al. Annu Rev Anim Biosci 2015

Representative (genome information for reference and representative genomes)

Reference genome:

Strigops habroptila bStrHab1.2.pri

Submitter: Vertebrate Genomes Project

Loc	Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene	Pseudogene
	Chr	1	NC_044277.2	CM013761.2	155.65	40.2	3,951	1	53	581	1,714	12

	Chr	2	NC_044278.2	CM013762.2	123.02	40.3	3,180	-	20	560	1,374	11

	Chr	3	NC_044279.2	CM013764.2	89.08	40.9	2,993	1	16	384	1,236	2

	Chr	4	NC_046358.1	CM013765.1	86.46	42.1	3,843	2	13	518	1,643	6

	Chr	5	NC_044281.2	CM013766.2	83.24	41.2	3,260	-	32	365	1,247	9

	Chr	6	NC_044282.2	CM013767.2	76.43	40.6	2,045	1	10	326	871	3

	Chr	7	NC_044283.2	CM013768.2	70.13	39.9	2,028	-	4	290	837	4

	Chr	8	NC_044284.2	CM013769.2	63.49	41.9	2,817	22	3	504	1,212	12

	Chr	9	NC_044285.2	CM013770.2	44.43	43.3	2,000	-	21	383	928	3

	Chr	10	NC_046359.1	CM013771.1	43.76	40.9	1,395	1	4	200	579	2

	Chr	11	NC_046360.1	CM013772.1	39.19	44.3	2,028	-	6	264	819	-

	Chr	12	NC_044288.2	CM013774.2	27.43	45.9	1,541	-	-	166	687	5

	Chr	13	NC_044289.2	CM013775.2	16.48	45.7	927	-	3	126	430	5

	Chr	14	NC_044290.2	CM013776.2	12.88	46.6	876	-	14	115	389	2

	Chr	15	NC_044291.2	CM013777.2	12.31	47.8	815	-	2	110	339	4

	Chr	16	NC_044292.2	CM013778.2	8.42	47.4	673	-	-	68	276	-

	Chr	17	NC_044293.2	CM013779.2	7.44	48.4	411	-	-	55	211	-

	Chr	18	NC_044294.2	CM013780.2	6.73	51.1	598	-	3	46	279	-

	Chr	19	NC_044295.2	CM013781.2	5.79	52.2	716	-	15	55	383	10

	Chr	20	NC_044296.2	CM013782.2	5.65	52.6	682	-	4	72	326	-

	Chr	21	NC_044297.2	CM013783.2	5.49	48.8	413	-	1	44	211	2

	Chr	22	NC_044298.2	CM013784.2	2.91	56.2	536	-	2	30	311	9

	Chr	23	NC_044299.2	CM013785.2	2.79	56.2	407	-	1	20	208	2

	Chr	W	NC_044301.2	CM013773.2	37.43	45.3	396	3	10	116	398	54

	Chr	Z	NC_044302.2	CM013763.2	101.87	40.5	3,228	1	12	476	1,326	7

		MT	-	CM013787.2	0.02	41.7	-	-	-	-	-	-

	Un	-	.	-	20.1	51.1	1,854	-	35	238	1,145	1

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