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Platform GPL19518 Query DataSets for GPL19518
Status Public on Nov 02, 2015
Title Custom nCounter Gene Expression CodeSets (Catalog No.  GXA-P1CS-048, Nanostring Technologies, Inc., Seattle, WA)
Technology type other
Distribution custom-commercial
Organism Mus musculus
Manufacturer NanoString Technologies
Manufacture protocol http://www.nanostring.com/
 
 
Submission date Dec 08, 2014
Last update date Nov 02, 2015
Contact name David Salomon
E-mail(s) salomond@mail.nih.gov
Organization name NIH
Department NCI
Street address 1050 Boyles Drive, Bldg. 560 Room 1246
City Frederick
State/province MD
ZIP/Postal code 21701
Country USA
 
Samples (36) GSM1561130, GSM1561131, GSM1561132, GSM1561133, GSM1561134, GSM1561135 
Series (1)
GSE63951 Targeted mRNA gene expression profiling of primary tumors and lung metastases using a mouse model of spontaneous metastatic mammary carcinoma

Data table header descriptions
ID
GENE SYMBOL Official HUGO Gene Symbol
GENE DESCRIPTION Gene description
GB_ACC NCBI Reference Sequence accession number
Nanostring Code Class Nanostring Code Class
Targeted Region Region in the target mRNA being probed
SEQUENCE
Tm_CP Calculated Tm of capture probe IF below or above cutoff:
Tm_RP Calculated Tm of reporter probe IF below or above cutoff
PN(CP;RP) NanoString part number for this probe pair
NSID Nanostring Internal Identifiers
SPOT_ID

Data table
ID GENE SYMBOL GENE DESCRIPTION GB_ACC Nanostring Code Class Targeted Region SEQUENCE Tm_CP Tm_RP PN(CP;RP) NSID SPOT_ID
1 Col1a1 collagen, type I, alpha 1 NM_007742.3 Endogenous 215-315 CAATGGTGAGACGTGGAAACCCGAGGTATGCTTGATCTGTATCTGCCACAATGGCACGGCTGTGTGCGATGACGTGCAATGCAATGAAGAACTGGACTGT 82 81 305721;205721 NM_007742.3:215
2 Col3a1 alpha 1(III) collagen NM_009930.1 Endogenous 4370-4470 CAAGACAGTCTTTGAATATCAAACACGCAAGGCAATGAGACTACCCATCATAGATATCGCACCCTATGACATTGGGGGTCCTGATCAAGAATTTGGTGTG 82 82 331409;231409 NM_009930.1:4370
3 Acta2 a-SMA NM_007392.2 Endogenous 45-145 GGAACCCTGAGACGCTGCTCCAGCTATGTGTGAAGAGGAAGACAGCACAGCCCTGGTGTGCGACAATGGCTCTGGGCTCTGTAAGGCCGGCTTCGCTGGT 82 82 301660;201660 NM_007392.2:45
4 Cdh1 cadherin 1 NM_009864.2 Endogenous 1610-1710 TCGAAGTGCCCGAAGACTTTGGTGTGGGTCAGGAAATCACATCTTATACCGCTCGAGAGCCGGACACGTTCATGGATCAGAAGATCACGTATCGGATTTG 83 82 325560;225560 NM_009864.2:1610
5 Cldn1 CLAUDIN NM_016674.3 Endogenous 2355-2455 TTGCTACATCTAGACAACGGGTTCATTAACTCTTGTCCTGCCTATGTTGCATGAGTCAAGAGGGGGCACAGGCTAACATGGTTTTATATTGGAAAACATG 78 82 331425;231425 NM_016674.3:2355
6 Tacstd1 EPCAM NM_008532.2 Endogenous 1550-1650 TGAAATTTGTACTCGTAAATACAAGCAGCTGGACACCGGCATTACCGATCGTAAAATTAGACGAACGTCTTATAGGTGCAGGTCCAGTGTGGTACTCAGA 81 80 327628;227628 NM_008532.2:1550
7 Fn1 fibronectin 1 NM_010233.1 Endogenous 2627-2727 TCCAGACCCTACCGTGGACCAGGTTGATGATACTTCCATTGTTGTTCGGTGGAGTAGACCCCAGGCACCTATCACAGGGTATAGAATTGTCTATTCACCT 81 83 313439;213439 NM_010233.1:2627
8 Foxc2 FOXC2 NM_013519.2 Endogenous 2253-2353 GGAGATTCTCCACGGGCGCAAGAGGTCTCTCCGGATAAGGTGCCTTCTGTAAACGAGTGCGGATTTGTAACCAGGCTATTTTGTTCTTGCCCAGAGCCTT 85 78 331421;231421 NM_013519.2:2253
9 Cdh2 cadherin 2 NM_007664.4 Endogenous 2861-2961 TGATCCTTGTTCTCATGTTTGTGGTATGGATGAAACGGCGGGATAAAGAGCGCCAAGCCAAGCAGCTTTTAATTGACCCAGAAGATGATGTAAGAGATAA 79 81 325489;225489 NM_007664.4:2861
10 Ocln OCCLUDIN NM_008756.2 Endogenous 115-215 CGCTTATCTTGGGAGCCTGGACATTTTGCTCATCATAAAGATTAGGTGACCAGTGACATCAGCCATGTCCGTGAGGCCTTTTGAAAGTCCACCTCCTTAC 78 83 331407;231407 NM_008756.2:115
11 Snai1 Snail NM_011427.2 Endogenous 910-1010 TCACTGCCAGGACTCCTTCCAGCCTTGGTCCGGGGACCTGTGGCGTCCATGTCTGGACCTGGTTCCTGCTTGGCTCTCTTGGTGGCCTTTGCCGCAGGTG 85 85 331418;231418 NM_011427.2:910
12 Snai2 Slug NM_011415.2 Endogenous 815-915 AGACCCACTCTGATGTAAAGAAATACCAGTGCAAAAACTGCTCCAAAACCTTCTCCAGAATGTCGCTTCTGCATAAACATGAGGAGTCTGGCTGCTGTGT 82 83 331417;231417 NM_011415.2:815
13 Vim Vimentin NM_011701.4 Endogenous 34-134 CAGCGCTCCTACGATTCACAGCCACCGCGCCCTCATTCCCTTGTTGCAGTTTTTCCAGCCGCAGCAAGCCAGCCCACCTTCGAAGCCATGTCTACCAGGT 85 85 330395;230395 NM_011701.4:34
14 Zfhx1a ZEB1 NM_011546.2 Endogenous 4150-4250 CTTAAGCAAGACCTGTGCTCTAAGTGCCATTCTCAGTATTGCAAGGCTCTGACAGCCTTCCCGCAGTGTGGCCTATATTAACTAGCAGTTGTTGATTCGT 82 79 331420;231420 NM_011546.2:4150
15 Zeb2 Zeb2 zinc finger E-box binding homeobox 2 NM_015753.3 Endogenous 3546-3646 ATTCCAGAAAAGCAGTTCCCTTCTGCGACATAAATACGAACACACAGGAAAGAGACCACACCAGTGTCAGATTTGTAAGAAAGCGTTCAAACACAAACAC 82 83 313314;213314 NM_015753.3:3546
16 Twist1 twist homolog 1 (Drosophila) NM_011658.2 Endogenous 994-1094 AATGGACAGTCTAGAGACTCTGGAGCTGGATAACTAAAAATAAATCTATATGACAAAGATTTTCATGGAAATTAGAAGAGCAGAGACCAAATTCACAAGA 82 78 315894;215894 NM_011658.2:994
17 Gsc Goosecoid NM_010351.1 Endogenous 797-897 CAGAAAACGCCGAGAAGTGGAACAAGACGTCCTCAAAAGCCTCGCCGGAGAAGAGGGAAGAGGAAGGTAAAAGCGATTTGGACTCGGACAGCTGACGGCC 86 85 331415;231415 NM_010351.1:797
18 Actb actin, beta NM_007393.1 Endogenous 815-915 CAGGTCATCACTATTGGCAACGAGCGGTTCCGATGCCCTGAGGCTCTTTTCCAGCCTTCCTTCTTGGGTATGGAATCCTGTGGCATCCATGAAACTACAT 81 79 301619;201619 NM_007393.1:815
19 Afp AFP NM_007423.4 Endogenous 290-390 AGAAAAACTCTGGCGATGGGTGTTTAGAAAGCCAGCTATCTGTGTTTCTGGATGAAATTTGTCATGAGACGGAACTCTCTAACAAGTATGGACTCTCAGG 80 81 329704;229704 NM_007423.4:290
20 Bmp2 bone morphogenetic protein 2 NM_007553.2 Endogenous 885-985 GAGGATTAGCAGGTCTTTGCACCAAGATGAACACAGCTGGTCACAGATAAGGCCATTGCTAGTGACTTTTGGACATGATGGAAAAGGACATCCGCTCCAC 82 82 309878;209878 NM_007553.2:885

Total number of rows: 118

Table truncated, full table size 20 Kbytes.




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