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Status
Public on Feb 24, 2019
Title
Agilent-084318 B. kashiwanohense HKW46A
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Bifidobacterium catenulatum subsp. kashiwanohense
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
B. kashiwanohense HKW46A Array Arrays of this design have barcodes that begin with 16084318 or 2584318. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Nov 28, 2017
Last update date
Feb 24, 2019
Contact name
Kieran James
E-mail(s)
kieran.james@umail.ucc.ie
Organization name
APC Microbiome Institute, University College Cork
Department
Microbiology
Lab
Van Sinderen Bifidobacteria Lab,
Street address
Biosciences Institute, Gaol Cross, Western Road
City
Cork
ZIP/Postal code
T12 YT20
Country
Ireland
Samples (6)
GSM2867361 , GSM2867362 , GSM2867363 , GSM2867364 , GSM2867365 , GSM2867366
Series (1)
GSE107439
Bifidobacterium kashiwanohense expresses fucosidases necessary for fucosyllactose utilisation as an adaptation to the infant gut environment
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
NAME
NAME
CONTROL_TYPE
Control type
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
SEQUENCE
Sequence
SPOT_ID
Spot identifier
Data table
ID
COL
ROW
NAME
CONTROL_TYPE
ACCESSION_STRING
CHROMOSOMAL_LOCATION
SEQUENCE
SPOT_ID
1
266
170
GE_BrightCorner
pos
CONTROL
2
266
168
DarkCorner
pos
CONTROL
3
266
166
DarkCorner
pos
CONTROL
4
266
164
DarkCorner
pos
CONTROL
5
266
162
DarkCorner
pos
CONTROL
6
266
160
DarkCorner
pos
CONTROL
7
266
158
DarkCorner
pos
CONTROL
8
266
156
DarkCorner
pos
CONTROL
9
266
154
DarkCorner
pos
CONTROL
10
266
152
DarkCorner
pos
CONTROL
11
266
150
DarkCorner
pos
CONTROL
12
266
148
CUST_1330_PI433425686
FALSE
BKHKW46A_0180
unmapped
ATTGCGATGACCATCTGAGAAATCACGGGTTCATACGAAAAGACAGTACATGGGAGCTAT
13
266
146
CUST_6528_PI433425686
FALSE
BKHKW46A_0956
unmapped
CCGTAGCACGATTAGCCGGTGTTTGCACATGGATTAATCTGATACTGACTGGATTCAGTT
14
266
144
CUST_12166_PI433425686
FALSE
BKHKW46A_1802
unmapped
GAGACCAAAGCAATGCTGTGATGGATGGTCAAAAACTGGTCACCAATGTGGCTTATATCG
15
266
142
CUST_11231_PI433425686
FALSE
BKHKW46A_1663
unmapped
CAGCATCGAAGTACTCAACGAACCAGTGAGCTGGTCAGTGTTCCATAGCACGTCGAACAC
16
266
140
CUST_2331_PI433425686
FALSE
BKHKW46A_0321
unmapped
ACTGACCGAATTCGATGTGAAGACGATGAAGCTCAAGCCGGAAACTGAACGTACGATTTG
17
266
138
CUST_13712_PI433425686
FALSE
BKHKW46A_2019
unmapped
TTCTTCATTCCGTACACCTTGTCGGTGCTGGTGATCGGCTACGTGTTCAAGTACATTTTC
18
266
136
CUST_959_PI433425686
FALSE
BKHKW46A_0130
unmapped
CGAACACCCGACCATCGCATGGCTGGCGTTCCTCAAGCAGATCCAGCTCACGCTCAAAAC
19
266
134
CUST_1322_PI433425686
FALSE
BKHKW46A_0179
unmapped
CTGCACGACATCAATAAGCCAGGTACCACACTGGTCATCCTCTATGTGGCTAACCTCATT
20
266
132
CUST_8648_PI433425686
FALSE
BKHKW46A_1292
unmapped
TATTGCGAATAGTACGTATTATGCGGGTATTGATTTGGGTATGTCGGTTGGTCCGTTTGT
Total number of rows: 45220 Table truncated, full table size 5441 Kbytes .
Supplementary data files not provided