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Platform GPL5780 Query DataSets for GPL5780
Status Public on Aug 30, 2007
Title IFR_Salmonella_7.3k_v1.0
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Salmonella enterica
Manufacturer Institute of Food Research, Norwich, UK
Manufacture protocol PCR product microarray of ORF's from S. Typhimurium LT2, S. Typhimurium SL1344, S. Typhimurium DT104, S. Enteritidis PT4, and S. Gallinarum 287/91. For the description of PCR amplification and printing procedures see:
Clements et al., (2002) PNAS 99(13): 8784-8789;
Nagy et al., (2006) Infect. Immun. 74(10):5914-5925
 
 
Contributor(s) Lucchini S, Thompson A, Hinton JC
Submission date Aug 28, 2007
Last update date Jul 14, 2009
Contact name Sacha Lucchini
E-mail(s) sacha.lucchini@bbsrc.ac.uk
Organization name Institute of Food Research
Department Molecular Microbiology
Street address Colney Lane
City Norwich
ZIP/Postal code NR4 7UA
Country United Kingdom
 
Samples (107) GSM227630, GSM227631, GSM227632, GSM227633, GSM227634, GSM227635 
Series (11)
GSE8985 Effect of hfq-deletion on Salmonella transcriptome
GSE16540 Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
GSE17771 Specific and pleiotropic patterns of mRNA regulation by ArcZ

Data table header descriptions
ID
METAROW
METACOLUMN
ROW
COLUMN
SPOT ID
SYNONYM
SEQUENCE
ORF locus tag
SPOT_ID spot identifier

Data table
ID METAROW METACOLUMN ROW COLUMN SPOT ID SYNONYM SEQUENCE ORF SPOT_ID
1 1 1 1 1 STM2048 pduM TCCTAGGAGCTCTTCTCGCATTGTCGAGGAGATTGTCTCCCGGCTGCATCGCCGTGCCCAGAGCACGGCGACGCTGAGCGTTACGCAACTTCGCGATGCCGACTGTCCAGCACTGTTCTGTCAGCACGCGTCGCTGCGCATCCTGCTCATCGACCTGCCGCTGCTGGGTCAGCTTGCGGATGCAGAAACCGGCGATGCCGCCGCCCGGAAAATTCACGACGCGCTGGCGTTTGGCATCCGCGTACAGCTCAGCCTGCACAGCCAGCTGCTGCCGGTTATCCCGGTAAAAAAACTGGCTCGTCTGCCGCTGGTATTCACCGATGAGCACGGACTGCCGCTGGTTCTGCATGCGGGTTCGGTGCTGAGCTATCGCGATGTCGCGCTGCTAAGCCGGGGGCGTGTGGTTGTCCACCGCAAATGCACGAAGAGCCCTAGGCA STM2048
2 1 1 1 2 STM2055 pduU TCCTAGGAGCTCTTCTACAACGGATCGCATGATTCAGGAATACGTGCCGGGGAAACAGGTCACTCTCGCGCACCTGATTGCTAATCCAGGGAAAGATCTCTTTAAGAAGCTGGGCCTGCAGGATGCAGTGTCCGCCATTGGCATCCTTACCATCACGCCGAGCGAAGCATCGATTATCGCCTGCGATATCGCCACCAAATCCGGCGCGGTGGAAATTGGTTTTCTCGATCGCTTTACCGGTGCCGTGGTGCTGACCGGCGACGTTTCTGCCGTCGAGTATGCCCTCAAGCAGGTAACGCGCACGCTGGGCGAAATGATGCAGTTCACCACTTGCTCGATCACCGAAGAGCCCTAGGCA STM2055
3 1 1 1 3 STM1925 flhD TCCTAGGAGCTCTTCTTGGGAACAATGCATACATCCGAGTTGCTAAAACACATTTATGACATCAATTTGTCATATTTACTCCTTGCACAGCGTTTGATCGTCCAGGACAAAGCATCTGCGATGTTCCGCCTCGGTATCAACGAAGAGATGGCAAACACACTGGGCGCGTTGACCCTGCCGCAGATGGTCAAACTGGCGGAGACGAACCAGTTAGTTTGTCATTTCCGGTTTGACGATCATCAGACGATCACCCGTTTGACTCAGGATTCGCGCGTCGATGACTTACAGCAGATTCACACAGGTATCATGCTTTCAACGCGTCTGCTCAATGAAGTGGACGATACGGCCGAAGAGCCCTAGGCA STM1925
4 1 1 1 4 STM1956 fliA TCCTAGGAGCTCTTCTTGGAACTGGACGATCTGCTACAAGCGGGCGGCATCGGGTTATTAAATGCGGTCGACCGATATGACGCTTTGCAAGGAACGGCATTTACCACTTACGCAGTGCAGCGTATTCGTGGGGCGATGCTGGATGAATTACGCAGCCGCGATTGGGTGCCGCGTAGCGTCCGGCGTAATGCCCGCGAAGTGGCGCAGGCGATGGGACAACTGGAGCAGGAACTGGGGCGTAATGCGACGGAAACCGAAGTGGCGGAACGTCTTGGCATCCCTGTTGCGGAGTATCGTCAGATGTTGCTCGATACCAACAACAGCCAACTTTTCTCTTACGATGAGTGGCGGGAAGAGCATGGCGATAGCATCGAACTGGTGACTGAAGAACATCAACAGGAAAACCCGTTACATCAACTGCTGGAGGGCGACCTGCGACAGCGGGTAATGGATGCGATTGAATCGCTGCCGGAACGCGAGCAACTGGTGTTAACGCTGTATTACCAGGAAGAGCTCAATCTCAAAGAGATTGGCGCGGTACTGGAAGTCGGCGAATCGCGGGTCAGCCAGTTGCATAGTCAGCGAAGAGCCCTAGGCA STM1956
5 1 1 1 5 STM3242 tdcD TCCTAGGAGCTCTTCTACTGGATGTCGCTACCTGTGATGTTTTAATGGCGGGAATAGCAGATGGAATGAATACTGAAAACGCCTTTTTATCTATTAATGGCGATAAGCCGATAAACCTCGCACACTCTAATTATGAGGACGCGTTAAAAGCCATTGCCTTTGAGCTGGAAAAACGTGATTTAACGGATAGCGTGGCATTAATTGGTCACCGTATCGCGCACGGTGGAGAGTTATTTACGCAGTCCGTCATTATTACCGATGAGATTATCGATAATATTCGTCGGGTATCGCCTTTAGCGCCGCTGCATAATTACGCTAATTTAAGCGGCATTGACGCGGCGCGGCATCTTTTCCCGGCCGTGCGTCAGGTGGCGGTATTTGATACCAGTTTCCACCAGACGCTGGCGCCGGAAGCCTATTTATACGGATTGCCGTGGGAGTATTTTTCCAGCCTGGGCGTGCGTCGCTACGGCTTTCACGGTACGTCGCATCGCTATGTTTCGCGGCGCGCGTATGAACTGCTTGACCTCGCGAAGAGCCCTAGGCA STM3242
6 1 1 1 6 STM1258 TCCTAGGAGCTCTTCTCGCTGGTCGCCGTTATTACAGAATGTCTCTTTTGATATCGCGCCCGGCGAAATGGTGGCATTGGTTGGCGGCAGCGGGGAGGGCAAAAGTCTGCTGCTGCAATGCCTGCTCGATCTGCTGCCGGAAAATTTACGCTTTCGGGGGGAGATTACGCTTGATGGCAACCGGCTGGACAGACATACCATCAGGCAGCTTAGGGGCAATACGTTTAGCTACGTGCCGCAGGGGGTACAGGCGCTTAATCCCATGCTGAATATCAGAAAACATTTGAACAGAGCATGTCATCTGACCGGACGCGCCTGGGATGAGACGCAAATGGTACAGCTATTACAGCAAAGCGATCTTGAACCGACAGTCCTGGAACGCTTTCCCCGCCAGCTCTCCGGTGGGATGGCTAAACGAATTCTGGCGTGCCACGCCTCGCTTAGCCAGGCACGTTATATCCTCGCGGATGAGATCACCGCCTGGCTTGATACCGCACTCGAAGAGCCCTAGGCA STM1258
7 1 1 1 7 STM1396 ssaE TCCTAGGAGCTCTTCTAAGATTTGCTGCTTCATTCGCGTGAAGAGGCCAAAGGCATAATTTTACAATTAAGGGCTGCCCGGAAACAGTTAGAAGAGAACAACGGCAAGTTACAGGATCCGCAGCAATATCAGCAAAACACCTTATTGCTTGAAGCGATCGAGCAGGCCGAAAATATCATCAACATTATTTATTATCGTTACCATAACAGCGCACTTGTAGTCGAAGAGCCCTAGGCA STM1396
8 1 1 1 8 STM1404 sseF TCCTAGGAGCTCTTCTGTGCTGCTTACGCCTGAACAAATAAGGCAGCAGAGGGATTATGCGATACATTTTATGCAATACACTATTCGTGCGCTGGGTGCGACAGTCGTGTTTGGGTTATCGGTTGCTGCAGCGGTAATTTCTGGCGGGGCAGGATTACCCATTGCTATTCTTGCGGGGGCGGCGCTCGTGATTGCTATTGGGGATGCTTGCTGTGCGTATCATAATTATCAATCGATATGTCAGCAAAAGGAGCCATTACAAACCGCCAGTGATAGCGTTGCTCTTGTGGTCAGTGCGCTGGCCTTAAAATGTGGGGCAAGTCTTAACTGCGCTAACACCCTTGCTAATTGTCTTTCTTTATTAATACGTTCAGGAATCGCTATTTCTATGTTGGTTTTACCCCTACAGTTTCCACTGCCCGCGGCTGAAAATATTGCGGCCTCTTTGGACATGGGGAGTGTAATTACCTCCGTTAGCCTGACGGCGATAGGTGCGGTACTGGATCGAAGAGCCCTAGGCA STM1404
9 1 1 1 9 STM2266 apbE TCCTAGGAGCTCTTCTATCCCAACACCAGCACAAATCGATGCGGCAAAAGCGAAAACAGGCCTGCAACATTTGCAGGTTATCGACAGGGCTGGACATCAGTTTTTGCAAAAAGATCTGCCGGATCTTTATGTTGATCTCTCCACGGTCGGGGAGGGCTATGCGGCGGATCATCTGGCGCGTCTGATGGAGCAGGAGGGCATTGCGCGTTATCTGGTCTCGGTGGGCGGCGCATTAAGCAGTCGCGGGATGAATGCGCAGGGGCAGCCGTGGCGCGTCGCGATTCAGAAGCCGACCGACCGGGAAAACGCAGTGCAGGCGATTGTGGATATCAACGGGCATGGCATCAGCACCTCCGGCAGCTACCGTAACTATTACGAGCTGGATGGCAAGCGTGTCTCGCACGTTATCGATCCGCAAACGGGGCGCCCCATTGAACACAATCTGGTATCGGTTACGGTCATCGCCGAAGAGCCCTAGGCA STM2266
10 1 1 1 10 STM1947 uvrY TCCTAGGAGCTCTTCTCAGGGATACGACGCATTCTTGAAGATATAAAGGGCATTAAAGTTGTCGGTGAAGCGTGCTGCGGAGAGGATGCGGTAAAATGGTGCCGTACTAACGCCGTTGACGTCGTGCTGATGGATATGAACATGCCCGGTATTGGCGGCCTTGAGGCGACGCGTAAAATTGCCCGCTCGACAGCGGATATCAAAGTGATCATGCTGACCGTCCATACGGAGAACCCGTTGCCCGCCAAAGTGATGCAGGCTGGCGCAGCTGGCTATCTCAGCAAAGGCGCTGCGCCTCAGGAGGTGGTGAGCGCTATTCGTTCGGTGTATTCCGGACAACGTTATATCGCCTCCGATATCGCTCAGCAGATGGCGCTCAGTCAGATTGAGCCTGCAAAAACGGAAACGCCGTTCGCCAGTTTGTCTGAACGCGAGTTGCAGATTATGCTGATGATCACCAAGGGTCAGAAGGTCAATGCGAAGAGCCCTAGGCA STM1947
11 1 1 1 11 STM1519 marA TCCTAGGAGCTCTTCTTTGCTCAAGAAAATTCTGCCGTAGACAAAAAAGAGGTATGACGATGTCCAGACGCAACACTGACGCTATTACTATTCATAGCATTTTGGACTGGATCGAGGATAACCTGGAGTCGCCGCTCTCACTGGAAAAAGTGTCTGAGCGTTCAGGATATTCCAAATGGCACCTGCAACGGATGTTTAAAAAAGAGACCGGTCATTCATTAGGCCAATACATCCGCAGCCGTAAAATGACGGAAATCGCGCAAAAATTAAAAGAGAGCAACGAGCCCATTCTCTATCTGGCGGAACGCTATGGCTTTGAGTCACAGCAAACATTGACCCGGACGTTCAAAAACTATTTTGATGTGCCGCCACACAAATACCGGATCACCAATATGCATGGCGAATCACGGTATATGCTGCCGCTGAACCGAAGAGCCCTAGGCA STM1519
12 1 1 1 12 STM1394 ssaC TCCTAGGAGCTCTTCTATCAGTCCGTCGTGGTTCCAGGGGTCGTTAGTGTATTGCGTGAGATGAGTAAAACCAGCGTCCCGACGTCATCGACGAACAATGGTTCACCCGCTACACAGGCATTGCCCATGTTTGCTGCCGACCCACGCCAGAATGCAGTGATCGTTCGTGATTATGCGGCCAATATGGCCGGGTATCGGAAACTCATCACAGAATTAGATCAACGCCAGCAGATGATAGAGATTTCGGTGAAAATTATCGATGTTAATGCTGGAGATATTAACCAGTTAGGCATCGACTGGGGAACGGCAGTGTCGCTGGGTGGCAAGAAAATTGCGTTCAATACAGGTTTGAATGACGGTGGTGCTAGTGGTTTTTCAACGGTAATCAGCGATACCTCAAACTTTATGGTGCGTCTGAATGCCCTGGAAAAAAGCTCTCAGGCTTATGTACTTTCCCAGCCATCTGTGGTGACTTTAAATAATATCCAGGCTGTGCTGGATAAAAATATTACTTTCTATACCAAACTGCAGGGAGAAAAAGTGGCTAAACTTGAATCCATCACTACGGGTTCTTTGTTACGCGTTACACCTCGCTTGTTAAATGACAATGGCACGCAAAAAATAATGCTTAATCTTAATATTCAGGATGGACAACAAAGTGATACGCAAAGCGAAACAGACCCGCGAAGAGCCCTAGGCA STM1394
13 1 1 1 13 STM2818 gshA TCCTAGGAGCTCTTCTCAGTACGGCACATCCAATACCGGGCGTTTTAAGACGCTCTATCGCGAAGGGCTGAAAAATCGTTATGGCGCTTTGATGCAAACCATCTCCGGCGTACATTACAATTTTTCATTACCGATGGCGTTCTGGCAGGCGAAATGCGGCGTTACGGAAGGCGAAGCGGCAAAAGAAAAAATTTCTGCCGGCTATTTTCGTCTGATTCGCAACTATTACCGTTTTGGCTGGGTCATCCCCTATCTGTTTGGCGCGTCTCCGGCCATTTGTTCCTCTTTCCTGCAAGGAAAGCCAACCACATTACCGTTTGAAAAAACGGACTGCGGCATGTACTACCTGCCGTATGCGACGTCGCTGCGTTTGAGTGATTTGGGCTATACCAATAAGTCGCAAAGCAATCTCGGAATTACGTTTAACGATTTGCATGAATACGTTGCAGGTCTGAAGCGCGCGATTAAAACCCCTTCCGAGGAGTACGCACGGATTGGTGTGGAAAAAGACGGTAAGCGGCTACAGATTAACAGCAACGTTCTGCAAATTGAAAATGAGCTGTACGCGCCCATTCGTCCCAAGCGCGTGACGCGCAGCGGCGAATCGCCTTCTGACGCGCTTCTGCGTGGTGGTATTGAGCGAAGAGCCCTAGGCA STM2818
14 1 1 1 14 STM2785 tctD TCCTAGGAGCTCTTCTTGCGTCTCTTATTGGCAGAAGATAACCGTGAGCTGGCTCACTGGCTGGAGAAAGCGCTGGTGCAAAACGGCTTTGCCGTGGACTGCGTATTTGACGGCCTGGCGGCTGACCATCTTCTGCACAGTGAAATGTACGCGCTGGCGGTGCTGGATATCAATATGCCGGGAATGGATGGACTGGAGGTGGTGCAACGGCTGCGTAAACGCGGTCAGACCTTGCCCGTTTTGCTGCTCACGGCGCGAAGCGCGGTGGCGGATCGCGTAAAAGGTCTCAACGTCGGCGCGGATGACTATCTGCCGAAACCCTTTGAACTGGAAGAGCTGGATGCCCGTTTACGGGCCTTGCTCCGACGCAGCGCTGGGCAGGTTCATGAAGTTCAGCAACTGGGGGAATTGATCTTTCATGATGAAGGGTATTTTCTGTTACAGGGGCAGCCGTTAGCGCTGACGCCGCGTGAGCAGGCGCTCTTAACCGTATTGATGTACCGACGAACGCGACCAGTTTCGCGTCAGCAGCTTTTTGAACAGGTGTTCAGCCTGAACGATGAGGTAAGCCCTGAAAGCATTGAACTTTATATTCATCGACTGCGTAAAAAACTTCAGGGAAGCGATGTACGAATTACGACGCTCGAAGAGCCCTAGGCA STM2785
15 1 1 1 15 STM2301 pqaB TCCTAGGAGCTCTTCTGCACCGATAGCGATACTCATGGCGCGCTTCGTCCTGCATAACGTAAAAGAAGGCGTCGCCGCGCTACGTGTCAACGGCGGGATCAACCTGGTGTTCGGGTTAGTCGGGATCGTCGCAGCGTTTGTCGTCTCCTCATGGGGCCCGCTGAAATCGCCGGTGTGGACGCATATCGAAACCTATAAAGTTTTTTGCGTCTGGGGCGTCTTTACTGTTTGGGCGTTTGTGGGCTGGTATAGCCTCTGTCATAGCCAAAAATACCTATTACCCGCGTTTTGTCCGCTGGGACTGGCGCTGCTGTTCGGCTTTTCCATCCCCGACAGGGTGATGGAGTCCAAACAGCCACAGTTTTTTGTCGAAATGACCCAGGCGCCTTTGGCATCAAGCCGCTATATTCTTGCCGACAACGTGGGCGTCGCCGCCGGGCTGGCCTGGAGTCTGAAACGAGACGATATTATGCTCTACGGACACGCGGGCGAACTCAGGTATGGTCTTAGCTATCCTGATGTGCAGGATAAATTCGTTAAAGCCGACGATTTTAACGCCTGGCTCAACCAGCATCGTCAGGACGAAGAGCCCTAGGCA STM2301
16 1 1 1 16 STM1444 slyA TCCTAGGAGCTCTTCTGTTCTGATCTGGCACGGTTGGTGCGCATTTGGCGTGCTCTGATTGACCATCGCCTCAAGCCTCTGGAATTGACGCAGACACATTGGGTCACGTTGCACAATATTCATCAATTGCCGCCTGACCAGTCGCAGATTCAATTGGCTAAAGCGATAGGCATTGAGCAGCCATCGCTGGTACGCACGTTGGATCAACTTGAAGATAAGGGGCTAATTTCGCGGCAAACCTGCGCCAGCGATCGTCGCGCTAAGCGGATTAAACTGACCGAAAAAGCGGACGCGCTGATCGCTGAGATGGAAGAGGTCGAAGAGCCCTAGGCA STM1444
17 1 1 1 17 STM1867 pagK TCCTAGGAGCTCTTCTTTACAATAGCGGCAGACTCTCAAGATCATAAAAAAGAAGAAACAATTAAGCCAATGCCTCAAAAGTGGTGTAATCTTTGGCCTGCTGGCATACCCTTCCCTGAAGATTCGAAGAGCCCTAGGCA STM1867
18 1 1 1 18 STM1979 fliP TCCTAGGAGCTCTTCTTTTCTCTGGCGGGTCTGTGGCTTTTTAGTCCCGCCGCCGCTGCGCAACTGCCGGGGCTTATCAGCCAACCATTAGCGGGCGGAGGCCAAAGCTGGTCATTATCCGTCCAGACGCTGGTTTTCATCACCTCGCTGACGTTTCTGCCGGCGATTTTACTGATGATGACGAGCTTCACGCGTATCATCATTGTTTTTGGCCTGTTGCGTAACGCGCTGGGCACGCCCTCGGCACCGCCAAATCAGGTGTTACTCGGGCTGGCGTTGTTTTTGACCTTTTTTATTATGTCGCCCGTCATTGACAAGATTTACGTGGATGCTTACCAGCCGTTTAGCGAGCAGAAAATTTCTATGCAGGAAGCGCTGGATAAAGGCGCGCAACCGTTACGCGCGTTCATGCTGCGCCAAACCCGCGAAGCCGATCTGGCGCTGTTTGCCCGTCTGGCCAATAGCGGTCCGTTACAGGGACCGGAAGCAGTACCGATGCGTATCCTCCTGCCCGCTTATGTCACGAAGAGCCCTAGGCA STM1979
19 1 1 1 19 PSLT038 spvC TCCTAGGAGCTCTTCTGCTGGATGTGCCTGACTATTCAGGGATGCGCCAGAGTGGTTTCTTTGCTATGAGCCAAGGTTTTCAGCTGAATAACCATGGTTACGATGTTTTCATCCATGCTCGTCGAGAATCACCTCAGTCTCAGGGCAAATTTGCCGGTGACAAGTTCCACATCAGTGTGCTCAGGGATATGGTGCCACAAGCATTTCAAGCGCTGTCCGGATTGCTGTTTTCAGAGGACAGTCCGGTAGATAAGTGGAAAGTGACCGATATGGAGAAGGTCGTTCAACAAGCCCGTGTTAGCCTGGGCGCTCAGTTCACGTTGTATATAAAACCAGACCAGGAAAATTCGCAGTACAGTGCGTCGTTTCTCCACAAGACACGGCAATTTATAGAGTGTCTGGAATCCAGACTATCCGAAAATGGGGTTATTTCAGGACAGTGTCCTGAGTCAGACGTTCATCCTGAAAATTGGAAATATCTCAGTTATCGTAATGAACTACGAAGTGGGCGTGATGGTGGCGAAATGCAGAGACAGGCTTTACGTGAGGAACCGAAGAGCCCTAGGCA PSLT038
20 1 1 1 20 PSLT035 TCCTAGGAGCTCTTCTATGTTAAGAGCCACGAAAGTATGCATATATCCGACACCGGAACAGGCGGAGCACCTTAACGCCCAGTTCGGTGCAGTCCGTTTTGTGTACAGCAAATCTCTGCATATCAAGAAACACGCTTATCAACGACACGGCGTAAGTTTAACCCCGCGTAAAGACATTAAACCGCTTCTGGCTGTAGCGAAAAAATTCCGTAAATTCCGTAAATACGCATGGCTAAAGGAATATGACTCTATTGCGTTGCAACAGGCGGTGATCAATCTCGATGTTGCCTTTTCCAACTGCTTCAATCCGAAGCTAAAAGCCCGCTTCCCTATGTTCAAGCGCAAACACGGCAAGCTGTTGGGGTAACGAAGAGCCCTAGGCA PSLT035

Total number of rows: 7296

Table truncated, full table size 2892 Kbytes.




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Supplementary data files not provided

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