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Platform GPL5791 Query DataSets for GPL5791
Status Public on Sep 10, 2007
Title IFR OGT Salmonella SL1344 22k v1.0
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Manufacturer Oxford Gene Technology
Manufacture protocol The microarrays were designed and produced by Oxford Gene Technology (Kidlington, UK). They consist of 21,939 60-mer oligonucleotides tiled throughout the S. Typhimurium SL1344 NCTC13347 genome and 636 control oligonucleotides. The S. Typhimurium SL1344 sequences were obtained from the Sanger Institute (Hinxton, UK) website (http://www.sanger.ac.uk/Projects/Salmonella/).
 
 
Contributor(s) Lucchini S, Harrison M, Hinton JC
Submission date Aug 30, 2007
Last update date Jan 14, 2008
Contact name Sacha Lucchini
E-mail(s) sacha.lucchini@bbsrc.ac.uk
Organization name Institute of Food Research
Department Molecular Microbiology
Street address Colney Lane
City Norwich
ZIP/Postal code NR4 7UA
Country United Kingdom
 
Samples (23) GSM256760, GSM256761, GSM256762, GSM256763, GSM459598, GSM459599 
Series (5)
GSE10149 Identification of RNA molecules associated with the RNA-chaperone Hfq
GSE18450 Identification of StpA-binding sites on the Salmonella genome
GSE19230 The effect of sfh deletion on Salmonella Typhimurium gene expression

Data table header descriptions
ID
METAROW
METACOLUMN
SUBGRIDROW
SUBGRIDCOL
NAME Description of spot content
MOLECULE Sequence location, chromosome or plasmid
RANGE_START Sequence start, relative to molecule
SEQUENCE
LT2 location Corresponding LT2 location

Data table
ID METAROW METACOLUMN SUBGRIDROW SUBGRIDCOL NAME MOLECULE RANGE_START SEQUENCE LT2 location
22575 1 1 1 1 CTRL:(+)MSHRmod_S_PSO-60-0001 AGCTCATTATGCCCGCGGCAGGGTCACGATGCTGTGGTAGGGGTCTGCGTTGTAGATCGA N/A (CTRL oligonucleotide)
22360 1 1 1 2 CTRL:(+)MSHRmod_S_PSO-60-0001 AGCTCATTATGCCCGCGGCAGGGTCACGATGCTGTGGTAGGGGTCTGCGTTGTAGATCGA N/A (CTRL oligonucleotide)
22145 1 1 1 3 CTRL:(+)MSHRmod_S_PSO-60-0001 AGCTCATTATGCCCGCGGCAGGGTCACGATGCTGTGGTAGGGGTCTGCGTTGTAGATCGA N/A (CTRL oligonucleotide)
21930 1 1 1 4 CTRL:(+)MSHRmod_S_PSO-60-0001 AGCTCATTATGCCCGCGGCAGGGTCACGATGCTGTGGTAGGGGTCTGCGTTGTAGATCGA N/A (CTRL oligonucleotide)
21715 1 1 1 5 CTRL:(+)MSHRmod_S_PSO-60-0001 AGCTCATTATGCCCGCGGCAGGGTCACGATGCTGTGGTAGGGGTCTGCGTTGTAGATCGA N/A (CTRL oligonucleotide)
21500 1 1 1 6 CTRL:(+)MSHRmod_S_PSO-60-0001 AGCTCATTATGCCCGCGGCAGGGTCACGATGCTGTGGTAGGGGTCTGCGTTGTAGATCGA N/A (CTRL oligonucleotide)
21285 1 1 1 7 CTRL:(+)MSHRmod_S_PSO-60-0001 AGCTCATTATGCCCGCGGCAGGGTCACGATGCTGTGGTAGGGGTCTGCGTTGTAGATCGA N/A (CTRL oligonucleotide)
21070 1 1 1 8 CTRL:(+)MSHRmod_S_PSO-60-0001 AGCTCATTATGCCCGCGGCAGGGTCACGATGCTGTGGTAGGGGTCTGCGTTGTAGATCGA N/A (CTRL oligonucleotide)
20855 1 1 1 9 CTRL:(+)MSHRmod_S_PSO-60-0001 AGCTCATTATGCCCGCGGCAGGGTCACGATGCTGTGGTAGGGGTCTGCGTTGTAGATCGA N/A (CTRL oligonucleotide)
20640 1 1 1 10 CTRL:(+)MSHRmod_S_PSO-60-0001 AGCTCATTATGCCCGCGGCAGGGTCACGATGCTGTGGTAGGGGTCTGCGTTGTAGATCGA N/A (CTRL oligonucleotide)
20425 1 1 1 11 CTRL:(+)MSHRmod_S_PSO-60-0001 AGCTCATTATGCCCGCGGCAGGGTCACGATGCTGTGGTAGGGGTCTGCGTTGTAGATCGA N/A (CTRL oligonucleotide)
20210 1 1 1 12 CTRL:(+)MSHRmod_S_PSO-60-0001 AGCTCATTATGCCCGCGGCAGGGTCACGATGCTGTGGTAGGGGTCTGCGTTGTAGATCGA N/A (CTRL oligonucleotide)
19995 1 1 1 13 CTRL:(+)MSHRmod_S_PSO-60-0001 AGCTCATTATGCCCGCGGCAGGGTCACGATGCTGTGGTAGGGGTCTGCGTTGTAGATCGA N/A (CTRL oligonucleotide)
19780 1 1 1 14 CTRL:(+)MSHRmod_S_PSO-60-0001 AGCTCATTATGCCCGCGGCAGGGTCACGATGCTGTGGTAGGGGTCTGCGTTGTAGATCGA N/A (CTRL oligonucleotide)
19565 1 1 1 15 CTRL:(+)MSHRmod_S_PSO-60-0001 AGCTCATTATGCCCGCGGCAGGGTCACGATGCTGTGGTAGGGGTCTGCGTTGTAGATCGA N/A (CTRL oligonucleotide)
19350 1 1 1 16 CTRL:(+)MSHRmod_S_PSO-60-0001 AGCTCATTATGCCCGCGGCAGGGTCACGATGCTGTGGTAGGGGTCTGCGTTGTAGATCGA N/A (CTRL oligonucleotide)
19135 1 1 1 17 CTRL:(+)MSHRmod_S_PSO-60-0001 AGCTCATTATGCCCGCGGCAGGGTCACGATGCTGTGGTAGGGGTCTGCGTTGTAGATCGA N/A (CTRL oligonucleotide)
18920 1 1 1 18 CTRL:(+)MSHRmod_S_PSO-60-0001 AGCTCATTATGCCCGCGGCAGGGTCACGATGCTGTGGTAGGGGTCTGCGTTGTAGATCGA N/A (CTRL oligonucleotide)
18705 1 1 1 19 CTRL:(+)MSHRmod_S_PSO-60-0001 AGCTCATTATGCCCGCGGCAGGGTCACGATGCTGTGGTAGGGGTCTGCGTTGTAGATCGA N/A (CTRL oligonucleotide)
18490 1 1 1 20 CTRL:(+)MSHRmod_S_PSO-60-0001 AGCTCATTATGCCCGCGGCAGGGTCACGATGCTGTGGTAGGGGTCTGCGTTGTAGATCGA N/A (CTRL oligonucleotide)

Total number of rows: 22575

Table truncated, full table size 3061 Kbytes.




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