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Platform GPL93 Query DataSets for GPL93
Status Public on Mar 11, 2002
Title [HG_U95C] Affymetrix Human Genome U95C Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site

The Human Genome U95 (HG-U95) Set, consisting of five GeneChip arrays, contains almost 63,000 probe sets interrogating approximately 54,000 clusters derived from the UniGene database (Build 95).
Based on this build and associated annotations, the HG-U95Av2 Array represents approximately 10,000 full-length genes, while arrays B through E represent approximately 50,000 EST clusters.
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
June 21, 2012: annotation table updated with netaffx build 32
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=hgu95
http://www.affymetrix.com/analysis/index.affx
Submission date Feb 19, 2002
Last update date Jun 21, 2012
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (505) GSM1345, GSM4233, GSM4238, GSM4397, GSM4402, GSM7627 
Series (15)
GSE465 Expression profiling in the muscular dystrophies
GSE494 Non-union skeletal fractures
GSE762 CCFAlmasan_CaP1

Data table header descriptions
ID Affymetrix Probe Set ID
GB_ACC GenBank Accession Number
SPOT_ID identifies controls
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Sequence Source The database from which the sequence used to design this probe set was taken.
Target Description
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID Entrez Gene Database UID
RefSeq Transcript ID References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".

Data table
ID GB_ACC SPOT_ID Species Scientific Name Annotation Date Sequence Type Sequence Source Target Description Representative Public ID Gene Title Gene Symbol ENTREZ_GENE_ID RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function
48609_r_at AI142272 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. AI142272:qg63b08.r1 Homo sapiens cDNA, 5' end /clone=IMAGE-1839831 /clone_end=5' /gb=AI142272 /gi=3658631 /ug=Hs.79828 /len=523 AI142272 G2/M-phase specific E3 ubiquitin protein ligase G2E3 55632 NM_017769 0000209 // protein polyubiquitination // inferred from electronic annotation /// 0001824 // blastocyst development // inferred from electronic annotation /// 0006464 // protein modification process // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0043066 // negative regulation of apoptosis // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0043231 // intracellular membrane-bounded organelle // inferred from direct assay 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0016881 // acid-amino acid ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
48610_at AA206763 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. AA206763:zq83a09.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-648184 /clone_end=3' /gb=AA206763 /gi=1802150 /ug=Hs.7991 /len=589 AA206763 V-set and transmembrane domain containing 2 like VSTM2L 128434 NM_080607
48612_at AA225490 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. AA225490:nc25b01.r1 Homo sapiens cDNA /clone=IMAGE-1009129 /gb=AA225490 /gi=1846817 /ug=Hs.80115 /len=539 AA225490 NEDD4 binding protein 1 N4BP1 9683 NM_153029 0031397 // negative regulation of protein ubiquitination // inferred from sequence or structural similarity /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005730 // nucleolus // inferred from electronic annotation /// 0016605 // PML body // inferred from sequence or structural similarity
48613_at W94986 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. W94986:zh47h04.r1 Homo sapiens cDNA, 5' end /clone=IMAGE-415255 /clone_end=5' /gb=W94986 /gi=1424325 /ug=Hs.80279 /len=624 W94986 G protein-coupled receptor kinase interacting ArfGAP 2 GIT2 9815 NM_001135213 /// NM_001135214 /// NM_014776 /// NM_057169 /// NM_057170 /// NM_139201 0008277 // regulation of G-protein coupled receptor protein signaling pathway // traceable author statement /// 0032312 // regulation of ARF GTPase activity // inferred from electronic annotation 0005654 // nucleoplasm // inferred from direct assay 0004872 // receptor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008060 // ARF GTPase activator activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
48615_at W63737 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. W63737:zd30c07.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-342156 /clone_end=3' /gb=W63737 /gi=1371317 /ug=Hs.8039 /len=600 W63737 family with sequence similarity 160, member A2 FAM160A2 84067 NM_001098794 /// NM_032127 0006810 // transport // inferred from electronic annotation /// 0007032 // endosome organization // inferred from mutant phenotype /// 0007040 // lysosome organization // inferred from mutant phenotype /// 0008333 // endosome to lysosome transport // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0045022 // early endosome to late endosome transport // inferred from mutant phenotype 0070695 // FHF complex // inferred from direct assay 0005515 // protein binding // inferred from physical interaction
48617_at AI927931 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. AI927931:wp03f01.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2463769 /clone_end=3' /gb=AI927931 /gi=5663895 /ug=Hs.8108 /len=711 AI927931 OMA1 homolog, zinc metallopeptidase (S. cerevisiae) OMA1 115209 NM_145243 0006508 // proteolysis // inferred from electronic annotation 0005739 // mitochondrion // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
48619_at AA702160 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. AA702160:zi91f03.s1 Homo sapiens cDNA, 3' end /clone=448157 /clone_end=3' /gb=AA702160 /gi=2705273 /ug=Hs.8115 /len=569 AA702160 TBC1 domain containing kinase TBCK 93627 NM_001163435 /// NM_001163436 /// NM_001163437 /// NM_033115 0006468 // protein phosphorylation // inferred from reviewed computational analysis /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0032313 // regulation of Rab GTPase activity // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation 0004672 // protein kinase activity // inferred from reviewed computational analysis /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from reviewed computational analysis /// 0005524 // ATP binding // inferred from electronic annotation
48620_at AL048971 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. AL048971:DKFZp434M1418_s1 Homo sapiens cDNA /clone=DKFZp434M1418 /gb=AL048971 /gi=4728280 /ug=Hs.8154 /len=734 AL048971 hypothetical LOC100216479 /// hypothetical LOC440905 LOC100216479 /// LOC440905 100216479 440905 NR_026758 /// XR_109892 /// XR_112389
48622_at AA418230 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. AA418230:zv97h11.r1 Homo sapiens cDNA, 5' end /clone=IMAGE-767781 /clone_end=5' /gb=AA418230 /gi=2080049 /ug=Hs.8172 /len=587 AA418230 coiled-coil domain containing 117 CCDC117 150275 NM_173510
48624_at R53875 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. R53875:yi03g07.r1 Homo sapiens cDNA, 5' end /clone=IMAGE-138204 /clone_end=5' /gb=R53875 /gi=815777 /ug=Hs.81831 /len=517 R53875
48626_at AI692896 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. AI692896:wd42e12.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2330830 /clone_end=3' /gb=AI692896 /gi=4970236 /ug=Hs.8207 /len=574 AI692896 coiled-coil domain containing 47 CCDC47 57003 NM_020198 0006983 // ER overload response // inferred from electronic annotation /// 0009790 // embryo development // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0055074 // calcium ion homeostasis // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction
48628_at AA984061 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. AA984061:am76b07.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-1616341 /clone_end=3' /gb=AA984061 /gi=3162586 /ug=Hs.8215 /len=618 AA984061 spermatid perinuclear RNA binding protein STRBP 55342 NM_001171137 /// NM_018387 /// NR_033234 0006928 // cellular component movement // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007286 // spermatid development // inferred from electronic annotation /// 0007638 // mechanosensory behavior // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0015630 // microtubule cytoskeleton // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred from electronic annotation /// 0003727 // single-stranded RNA binding // inferred from electronic annotation
48629_s_at AI768215 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. AI768215:wg82e09.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2371624 /clone_end=3' /gb=AI768215 /gi=5234724 /ug=Hs.8217 /len=579 AI768215 stromal antigen 2 STAG2 10735 NM_001042749 /// NM_001042750 /// NM_001042751 /// NM_006603 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007062 // sister chromatid cohesion // inferred from mutant phenotype /// 0007067 // mitosis // inferred from electronic annotation /// 0007126 // meiosis // inferred from electronic annotation /// 0032876 // negative regulation of DNA endoreduplication // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction
48630_r_at AI768215 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. AI768215:wg82e09.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2371624 /clone_end=3' /gb=AI768215 /gi=5234724 /ug=Hs.8217 /len=579 AI768215 stromal antigen 2 STAG2 10735 NM_001042749 /// NM_001042750 /// NM_001042751 /// NM_006603 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // inferred from electronic annotation /// 0007062 // sister chromatid cohesion // inferred from mutant phenotype /// 0007067 // mitosis // inferred from electronic annotation /// 0007126 // meiosis // inferred from electronic annotation /// 0032876 // negative regulation of DNA endoreduplication // inferred from mutant phenotype /// 0051301 // cell division // inferred from electronic annotation 0000775 // chromosome, centromeric region // inferred from electronic annotation /// 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0015629 // actin cytoskeleton // inferred from direct assay 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction
48631_at AA186324 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. AA186324:zp80e07.s1 Homo sapiens cDNA, 3' end /clone=IMAGE-626532 /clone_end=3' /gb=AA186324 /gi=1774442 /ug=Hs.82506 /len=635 AA186324 cell cycle progression 1 CCPG1 9236 NM_004748 /// NM_020739 0007049 // cell cycle // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation
48633_at AI770067 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. AI770067:wi79f03.x1 Homo sapiens cDNA, 3' end /clone=IMAGE-2399549 /clone_end=3' /gb=AI770067 /gi=5236663 /ug=Hs.82506 /len=725 AI770067 cell cycle progression 1 CCPG1 9236 NM_004748 /// NM_020739 0007049 // cell cycle // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation
48634_at W16645 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. W16645:zb06c09.r1 Homo sapiens cDNA, 5' end /clone=IMAGE-301264 /clone_end=5' /gb=W16645 /gi=1291046 /ug=Hs.82664 /len=665 W16645 Ewing tumor-associated antigen 1 ETAA1 54465 NM_019002 0005737 // cytoplasm // inferred from electronic annotation
48640_g_at W16645 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. W16645:zb06c09.r1 Homo sapiens cDNA, 5' end /clone=IMAGE-301264 /clone_end=5' /gb=W16645 /gi=1291046 /ug=Hs.82664 /len=665 W16645 Ewing tumor-associated antigen 1 ETAA1 54465 NM_019002 0005737 // cytoplasm // inferred from electronic annotation
48643_r_at AI754069 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. AI754069:cr19c09.x1 Homo sapiens cDNA, 3' end /clone=HBMSC_cr19c09 /clone_end=3' /gb=AI754069 /gi=5132333 /ug=Hs.82664 /len=514 AI754069 Ewing tumor-associated antigen 1 ETAA1 54465 NM_019002 0005737 // cytoplasm // inferred from electronic annotation
48645_at D11880 Homo sapiens Jun 9, 2011 Consensus sequence GenBank Cluster Incl. D11880:HUMHM05C10 Homo sapiens cDNA, 3' end /clone=hm05c10 /clone_end=3' /gb=D11880 /gi=767823 /ug=Hs.83196 /len=606 D11880 hook homolog 1 (Drosophila) HOOK1 51361 NM_015888 0000226 // microtubule cytoskeleton organization // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0007032 // endosome organization // inferred from mutant phenotype /// 0007040 // lysosome organization // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0007286 // spermatid development // inferred from electronic annotation /// 0008333 // endosome to lysosome transport // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0045022 // early endosome to late endosome transport // inferred from mutant phenotype 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0030897 // HOPS complex // inferred from direct assay /// 0070695 // FHF complex // inferred from direct assay 0003779 // actin binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from physical interaction

Total number of rows: 12646

Table truncated, full table size 8913 Kbytes.






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