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Series GSE137933 Query DataSets for GSE137933
Status Public on Sep 25, 2019
Title Characterization of novel STY1099 protein involved in the peroxide stress response of Salmonella Enteritidis
Organism Salmonella enterica subsp. enterica serovar Enteritidis
Experiment type Expression profiling by high throughput sequencing
Summary We report our results of RNA-seq analysis on the wild type Salmonella Enteritidis and its yccT (i.e., yccT encodes STY1099 protein) mutant with and without H2O2 treatment
 
Overall design RNA was isolated from cultures of the wild type Salmonella Enteritidis and S. Enteritidis yccT mutant exposed to H2O2 and without exposure to H2O2. Libraries were created using standard Illumina reagents and analyzed using a HiSeq 2500 Illumina.
 
Contributor(s) Vidovic S, Abrahante JE
Citation(s) 31766267
Submission date Sep 24, 2019
Last update date Aug 03, 2020
Contact name Sinisa Vidovic
E-mail(s) svidovic@umn.edu
Phone 6126263669
Organization name University of Minnesota
Street address 1971 Commonwealth Avenue
City Saint Paul
State/province MN
ZIP/Postal code 55108
Country USA
 
Platforms (1)
GPL27516 Illumina HiSeq 2500 (Salmonella enterica subsp. enterica serovar Enteritidis)
Samples (6)
GSM4094624 yccT mutant_untreated_rep1
GSM4094625 yccT mutant_untreated_rep2
GSM4094626 yccT mutant_untreated_rep3
Relations
BioProject PRJNA573907
SRA SRP223088

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE137933_subreads.txt.gz 61.1 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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