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Series GSE193063 Query DataSets for GSE193063
Status Public on May 25, 2022
Title Transcriptomic analysis of attenuated Salmonella Typhimurium infected chicken primary macrophages
Organism Gallus gallus
Experiment type Expression profiling by high throughput sequencing
Summary Salmonella enterica is one of the most important foodborne pathogens that infect a variety of animals and birds. In humans, S. Typhimurium causes gastroenteritis, leading to vomiting, diarrhea, fever, and abdominal cramps. We mainly get infected with Salmonella by ingesting comminated poultry products. Therefore, developing an oral live attenuated vaccine for the poultry industry is our best bet against Salmonella infection. In this article, we investigated the potential of the next generation of Salmonella vaccines. We generated a library of potentially attenuated S. Typhimurium mutants and compared fitness to that of a commercial vaccine. We also investigated the invasion and survival potential of these mutants in chicken macrophages. Our data indicate that although these mutants had no significant growth defects, they were much sensitive to macrophage attack. Analyzing the transcriptome data from infected primary chicken macrophages, we concluded that these mutants elicit a robust immune response by activating several immunoregulatory pathways. Our data also indicates that by combining phoPQ deletion with an already existing cya-crp deletion in MeganVac1, a much stronger immune response can be generated.
 
Overall design Transcriptome profile of attenuated Salmonella infected primary macrophages
 
Contributor(s) Bhowmik BK, Gangaiah DM, Kumar A
Citation(s) 35591991
Submission date Jan 05, 2022
Last update date May 25, 2022
Contact name Bijit Kumar Bhowmik
E-mail(s) bijitkrbhowmik@gmail.com
Organization name Elanco Animal Health
Department Discovery Bacteriology & Microbiome
Street address 2500 Innovation Way
City Greenfield
State/province IN
ZIP/Postal code 46140
Country USA
 
Platforms (1)
GPL19787 Illumina NextSeq 500 (Gallus gallus)
Samples (12)
GSM5772479 Macrophage-only-R1
GSM5772480 Macrophage-only-R2
GSM5772481 Macrophage-MeganVac1-R1
Relations
BioProject PRJNA794354

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE193063_Macrophage_vs_UK1.txt.gz 608.8 Kb (ftp)(http) TXT
GSE193063_Macrophage_vs_UK1_cya_crp.txt.gz 549.5 Kb (ftp)(http) TXT
GSE193063_Macrophage_vs_UK1_cya_crp_phoPQ.txt.gz 556.4 Kb (ftp)(http) TXT
GSE193063_Macrophage_vs_UK1_cya_crp_sifA.txt.gz 556.8 Kb (ftp)(http) TXT
GSE193063_Macrophage_vs_UK1_cya_crp_sopF.txt.gz 540.9 Kb (ftp)(http) TXT
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