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Series GSE213240 Query DataSets for GSE213240
Status Public on Jul 01, 2024
Title Single cell sequencing of rat spinal cord
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary Spinal cord injury (SCI) refers to the damage to the spinal cord due to trauma, disease or degeneration, and the number of new cases is increasing yearly. The changes of cells in the area of SCI are significant to tissue injury. However, the changes in cellular composition, the trajectory of cell development and the interesting relationship of intercellular communication in the injured area are still unclear. In this study, we used single-cell RNA sequencing to evaluate almost all the cell types that make up the site of SCI in rats.
 
Overall design According to the injury degree of spinal cord injury, the spinal cord cells of rats were isolated and analyzed by scRNAseq.
 
Contributor(s) Li E
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Sep 13, 2022
Last update date Jul 01, 2024
Contact name Erliang Li
E-mail(s) liel17@lzu.edu.cn
Organization name tangdu hospital
Street address xin si street
City xi'an
ZIP/Postal code 710000
Country China
 
Platforms (1)
GPL25947 Illumina NovaSeq 6000 (Rattus norvegicus)
Samples (8)
GSM6576325 Sham_1
GSM6576326 Sham_2
GSM6576327 Mild_1
Relations
BioProject PRJNA880173

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE213240_RAW.tar 461.9 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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