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Series GSE41883 Query DataSets for GSE41883
Status Public on Oct 31, 2012
Title Human annulus disc cells grown in a 3D collagen sponge and exposed to TNF-a
Organism Homo sapiens
Experiment type Expression profiling by array
Summary The objective of this study was to determine how TNF-a, an important proinflammatory cytokine, affects gene expression in the human annulus.
Cells were grown in a 3D collagen construct for 14 days with TNF-a. mRNA was isolated and subjected to microarray. Fold changes in gene expression were determined via GeneSifer software.
 
Overall design Human disc tissue samples were obtained from surgical disc procedures performed on patients with herniated discs and degenerative disc disease. Cultured annulus cells were grown in a 3D collagen construct with or without 10e3 pM TNF-a for a total of 14 days. Following homogenization in TRIzol reagent, total RNA was isolated and analyzed via mircoarray.
 
Contributor(s) Gruber HE, Hoelscher GL, Ingram JA, Hanley EN Jr
Citation(s) 24468005
Submission date Oct 28, 2012
Last update date Nov 02, 2023
Contact name Helen Gruber
E-mail(s) Helen.Gruber@carolinashealthcare.org
Organization name Carolinas HealthCare System
Department Orthopaedic Surgery
Lab Orthopaedic Research
Street address 1542 Graden Terrace
City Charlotte
State/province NC
ZIP/Postal code 28203
Country USA
 
Platforms (1)
GPL1352 [U133_X3P] Affymetrix Human X3P Array
Samples (8)
GSM1026926 Disc Cells in 3D_Control (95)
GSM1026927 Disc Cells in 3D_TNF-a (95)
GSM1026928 Disc Cells in 3D_Control (126)
Relations
BioProject PRJNA178513

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE41883_RAW.tar 37.0 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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