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| Status |
Public on Aug 04, 2015 |
| Title |
Genome-wide copy number profiling of 18 gastric cancer cell lines using 500K SNP arrays |
| Organism |
Homo sapiens |
| Experiment type |
Genome variation profiling by SNP array
SNP genotyping by SNP array
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| Summary |
The genomic loci with copy number alterations are known to harbor cancer genes. We investigated a comprehensive panel of gastric cancer cell lines for their genome-wide copy number alterations. Eighteen gastric cancer cell lines were profiled using Affymetrix 500K SNP arrays. For copy number calculation, seven independent normal blood samples were profiled together. The copy numbers were calculated genome-wide, in these cell lines with high resolution and reveal the cell line specific amplification and copy number changes.
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| Overall design |
18 gastric cancer cell lines were profiled using high resolution 500k SNP arrays from Affymetrix. 7 Independent normal blood samples were profiled and used for copy number calculation.
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| Contributor(s) |
Hui M, Wu J, Muthuswami M, Kumaresan G, Tan P |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Sep 21, 2013 |
| Last update date |
May 17, 2017 |
| Contact name |
Muthulakshmi Muthuswami |
| Organization name |
Duke NUS Graduate Medical School
|
| Department |
Cancer and Stem cell Biology
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| Street address |
8 College Road
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| City |
Singapore |
| ZIP/Postal code |
169857 |
| Country |
Singapore |
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| Platforms (2) |
| GPL3718 |
[Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array |
| GPL3720 |
[Mapping250K_Sty] Affymetrix Mapping 250K Sty2 SNP Array |
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| Samples (50)
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| Relations |
| BioProject |
PRJNA221119 |
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