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Sample GSM116215 Query DataSets for GSM116215
Status Public on Mar 23, 2015
Title Radiation induced C3H mouse Fibrosarcoma, 8 days after gamma irradiation at 30Gy (g_8520_30_8d_3)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Radiation induced C3H mouse Fibrosarcoma eatablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 8days after gamma irradiation at 30Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 6003.4570 70.7289 G 68.5698 6079.4570 4226.0000 5746.3188 142 13.4461898803711 88.6608424824386 76.4167 76.0000 8.4406 124 70.7289
1002 1046.8000 12.3327 G 12.6182 1123.8000 1285.0000 545.0306 127 12.7161874771118 89.0617186294866 76.3000 77.0000 8.0411 124 12.3327
1003 25.1806 0.2967 G 1.1302 101.1806 102.0000 12.1659 72 9.57461452484131 89.5219288447701 76.3094 76.0000 9.0146 187 0.2967
1004 51.4040 0.6056 G 1.4496 128.4040 129.0000 18.7374 101 11.3400707244873 88.5801836782962 76.3950 77.0000 7.7201 123 0.6056
1005 47.6547 0.5614 G 1.4034 123.6547 120.0000 29.0709 141 13.3987598419189 88.1078191915735 75.5550 76.0000 8.0719 226 0.5614
1006 12.2927 0.1448 G 1.0137 89.2927 90.0000 11.6979 41 7.22515201568604 88.0897727538671 76.6556 77.0000 7.3932 186 0.1448
1007 5926.0708 69.8172 G 66.0197 6004.0708 3114.0000 5680.8374 143 13.4934520721436 90.9436151495348 76.8250 78.0000 8.6291 124 69.8172
1008 5921.0264 69.7578 G 68.1614 5997.0264 3284.0000 5863.4292 155 14.04820728302 87.9827446678718 75.8034 76.0000 7.9885 121 69.7578
1010 289.5882 3.4117 G 4.1329 365.5882 398.0000 110.7173 121 12.4121704101563 88.457553487697 75.8376 76.0000 8.3050 121 3.4117
1012 457.0562 5.3847 G 6.0400 532.0562 611.0000 209.3855 89 10.6451082229614 88.0891221716199 75.7692 75.0000 8.7261 188 5.3847
1013 38.9275 0.4586 G 1.3065 113.9275 113.0000 12.6644 69 9.37302112579346 87.2011549282358 76.3571 75.0000 8.1341 188 0.4586
1014 6100.7085 71.8747 G 69.3044 6176.7085 3681.0000 5880.3398 146 13.6342573165894 89.1243567715237 77.1417 76.0000 8.7496 124 71.8747
1015 6937.8579 81.7374 G 80.2952 7012.8579 4064.0000 7029.7686 157 14.1385507583618 87.338448785742 76.5750 75.0000 8.2256 124 81.7374
1017 59.8621 0.7053 G 1.5575 133.8621 134.0000 14.9075 87 10.5248203277588 85.9460013844229 73.9500 74.0000 7.9640 186 0.7053
1018 26.8732 0.3166 G 1.1675 101.8732 101.0000 12.8643 71 9.50789165496826 87.253874545301 75.3626 75.0000 8.1692 188 0.3166
1019 67.9605 0.8007 G 1.6818 140.9605 145.0000 26.6115 76 9.83698177337646 83.8129790825247 73.2037 73.0000 7.2087 168 0.8007
1020 11.1340 L 0.9864 85.1340 87.0000 13.2654 97 11.1132459640503 86.3051905892046 74.2396 74.0000 8.2035 200 0.1312
1021 6087.9722 71.7246 G 69.5239 6163.9722 4061.0000 5651.2100 146 13.6342573165894 88.6597643096904 76.1858 76.0000 8.4398 117 71.7246
1022 5914.2588 69.6780 G 67.3387 5990.2588 3870.0000 5666.9121 141 13.3987598419189 88.9571400845594 75.5000 76.0000 8.6381 124 69.6780
1024 11.9130 L 0.9901 84.9130 86.0000 10.3416 46 7.65303993225098 85.7639877012198 73.3022 73.0000 8.5093 188 0.1404

Total number of rows: 36227

Table truncated, full table size 4532 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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