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Sample GSM116219 Query DataSets for GSM116219
Status Public on Mar 23, 2015
Title Radiation induced C3H mouse Fibrosarcoma, 1 day after gamma irradiation at 50Gy (g_8520_50_1d_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Radiation induced C3H mouse Fibrosarcoma eatablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1day after gamma irradiation at 50Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 13078.3701 103.0305 G 126.3559 13163.3701 5871.0000 13616.4590 183 15.2644300460815 104.1769739533 86.1017 85.0000 12.7847 122 103.0305
1002 2343.0891 18.4587 G 25.3861 2423.0891 2898.0000 1397.0570 148 13.7273254394531 95.4496268182925 81.0251 80.0000 10.2997 207 18.4587
1003 39.0435 0.3076 G 1.1438 117.0435 116.0000 15.7079 92 10.8230323791504 102.33079769364 80.8908 78.0000 16.2205 123 0.3076
1004 100.8929 0.7948 G 1.9358 179.8929 186.0000 36.7108 114 12.0477924346924 92.9306946253251 78.8655 79.0000 9.2871 123 0.7948
1005 160.3615 1.2633 G 2.5391 239.3615 249.0000 69.0297 83 10.2800235748291 94.2710819700578 79.2253 79.0000 10.1807 188 1.2633
1006 16.6122 0.1309 G 1.0372 94.6122 95.0000 10.9522 49 7.89865398406982 91.2157786690713 78.8833 78.0000 8.8105 186 0.1309
1007 13335.0986 105.0529 G 132.8971 13415.0986 6569.0000 13768.0586 185 15.3476161956787 100.943528833089 82.9457 80.0000 13.9624 229 105.0529
1008 12312.0381 96.9933 G 132.8057 12392.0381 4495.0000 13860.9668 188 15.4715557098389 93.3095493300265 80.7512 80.0000 8.8730 225 96.9933
1010 615.3047 4.8473 G 7.3581 695.3047 781.0000 287.3221 130 12.8655023574829 94.4951711319172 80.0333 80.0000 9.6634 124 4.8473
1012 674.1304 5.3108 G 8.0300 754.1304 847.0000 333.9895 92 10.8230323791504 93.9146756965782 79.8626 80.0000 9.2765 188 5.3108
1013 57.4366 0.4525 G 1.4406 137.4366 131.0000 39.3893 71 9.50789165496826 95.4000746054006 80.4944 80.0000 10.2667 186 0.4525
1014 12756.6260 100.4958 G 135.1969 12836.6260 4055.0000 13751.5928 173 14.8415107727051 94.947635871798 81.2167 80.0000 9.9651 124 100.4958
1015 12538.8438 98.7801 G 129.8684 12619.8438 5428.0000 13685.8389 181 15.1807889938354 97.1741193480995 81.8655 81.0000 10.7827 123 98.7801
1017 20.6111 0.1624 G 1.0460 100.6111 100.0000 16.2554 54 8.29185962677002 96.1889891569204 79.6077 80.0000 10.7927 187 0.1624
1018 29.7222 0.2341 G 1.1592 108.7222 106.0000 20.8881 72 9.57461452484131 93.786756669015 79.9011 79.0000 9.8578 188 0.2341
1019 76.8133 0.6051 G 1.6534 155.8133 162.0000 28.9665 75 9.77204990386963 94.2358050443588 78.6760 79.0000 10.1572 185 0.6051
1020 44.3699 0.3495 G 1.2999 124.3699 125.0000 15.9241 73 9.64087581634521 95.675140503856 80.2198 80.0000 10.4501 188 0.3495
1021 12885.4502 101.5106 G 137.4910 12965.4502 4431.0000 13850.1748 184 15.306079864502 94.3003470019958 79.6667 80.0000 9.5336 124 101.5106
1022 12809.0176 100.9085 G 130.8500 12892.0176 4435.0000 14090.8857 174 14.8843431472778 98.5251813796327 82.5917 83.0000 10.3501 124 100.9085
1024 5.8545 L 0.9033 83.8545 80.0000 14.4190 55 8.36828422546387 92.830994037248 77.9355 78.0000 9.8873 95 0.0461

Total number of rows: 36227

Table truncated, full table size 4577 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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