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Sample GSM116235 Query DataSets for GSM116235
Status Public on Mar 23, 2015
Title Mammary Carcinoma induced spontaneously in C3H/He mouse, 1 day after gamma irradiation at 50Gy (g_mmca_50_1d_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Mammary Carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1day after gamma irradiation at 50Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 10177.0068 64.1080 G 110.6702 10256.0068 4660.0000 10923.3545 159 14.2283201217651 92.6717791157283 78.9750 79.0000 9.1145 124 64.1080
1002 6280.7466 39.5643 G 68.4354 6358.7466 7163.0000 4493.1113 144 13.5405502319336 92.9160302279853 78.4286 78.0000 9.9440 123 39.5643
1003 131.9490 0.8312 G 2.3522 208.9490 215.0000 43.1349 100 11.2837915420532 88.8311418194807 77.3039 77.0000 7.8874 187 0.8312
1004 166.3750 1.0480 G 2.4532 244.3750 254.0000 62.8237 106 11.617374420166 99.6159561550365 81.0167 78.0000 14.4106 124 1.0480
1005 43.0877 0.2714 G 1.2381 123.0877 124.0000 17.5362 57 8.51907634735107 99.4137104476692 82.8242 80.0000 12.9425 188 0.2714
1006 37.7188 0.2376 G 1.2695 116.7188 115.0000 15.1549 64 9.02703380584717 91.9432099576958 78.4505 79.0000 8.6288 188 0.2376
1007 10360.3438 65.2629 G 113.3124 10438.3438 4991.0000 11294.8164 162 14.3619222640991 92.1200165256225 77.5750 78.0000 9.4133 124 65.2629
1008 10319.1133 65.0032 G 112.7251 10398.1133 3049.0000 11532.8232 170 14.7122640609741 92.2431073243207 80.3583 79.0000 8.8287 124 65.0032
1010 518.0684 3.2635 G 6.5912 594.0684 644.0000 208.2216 119 12.3091630935669 90.130083325273 76.7500 76.0000 9.4201 124 3.2635
1012 837.8021 5.2776 G 10.0498 915.8021 1013.0000 470.7555 96 11.0558128356934 91.1264581078788 78.4890 78.0000 8.7510 188 5.2776
1013 79.3924 0.5001 G 1.7582 155.3924 158.0000 32.3554 79 10.0292530059814 88.3791689676319 76.8297 76.0000 8.2528 188 0.5001
1014 11316.0703 71.2833 G 119.9179 11396.0703 5020.0000 11997.0596 159 14.2283201217651 95.0322825404474 80.0500 80.0000 10.0215 124 71.2833
1015 10634.0742 66.9872 G 114.3846 10715.0742 3698.0000 11450.2393 163 14.4061803817749 93.6758607036957 80.2333 81.0000 8.4506 124 66.9872
1017 51.6385 0.3253 G 1.4407 128.6385 127.0000 18.4388 83 10.2800235748291 89.2869459739106 77.2818 77.0000 8.1913 187 0.3253
1018 136.6383 0.8607 G 2.3356 212.6383 215.0000 43.3445 94 10.9400415420532 91.0425933374029 75.6044 76.0000 10.0284 188 0.8607
1019 217.5555 1.3704 G 3.3247 292.5555 334.0000 101.7838 81 10.1554126739502 87.9943256434405 74.4972 75.0000 8.6629 187 1.3704
1020 37.8529 0.2384 G 1.2688 115.8529 115.0000 15.5197 68 9.30485343933105 91.3057450154563 77.6685 78.0000 8.8705 187 0.2384
1021 10667.0635 67.1950 G 111.6179 10748.0635 4407.0000 11589.4639 159 14.2283201217651 96.2933767510277 80.7583 81.0000 10.1956 124 67.1950
1022 11486.6533 72.3578 G 121.2856 11567.6533 5502.0000 12484.5762 178 15.0544557571411 95.3753183511482 80.5750 81.0000 9.5835 124 72.3578
1024 6.3059 L 0.9334 84.3059 85.0000 10.0867 85 10.4031419754028 90.3168442277169 77.5708 78.0000 8.2112 220 0.0397

Total number of rows: 36227

Table truncated, full table size 4581 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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