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Sample GSM116241 Query DataSets for GSM116241
Status Public on Mar 23, 2015
Title Mammary Carcinoma induced spontaneously in C3H/He mouse, 1 day after gamma irradiation at 70Gy (g_mmca_70_1d_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Mammary Carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1day after gamma irradiation at 70Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1002 5599.4453 37.4482 G 62.5039 5677.4453 6677.0000 3873.4172 157 14.1385507583618 90.8333924726674 78.2170 78.0000 8.5556 220 37.4482
1003 114.5093 0.7658 G 2.0849 190.5093 197.0000 40.4256 110 11.8345403671265 91.3745234321575 76.8305 76.0000 10.2497 122 0.7658
1004 67.8762 0.4539 G 1.6076 144.8762 146.0000 26.4185 107 11.6720447540283 90.1187839717815 75.9000 77.0000 8.7459 124 0.4539
1005 32.2586 0.2157 G 1.2120 109.2586 112.0000 12.5486 58 8.59348011016846 90.1505773003292 76.9615 77.0000 8.7670 188 0.2157
1006 39.8667 0.2666 G 1.3096 114.8667 100.0000 59.7139 60 8.74038791656494 87.7086116369546 75.2747 75.0000 8.4724 188 0.2666
1010 377.0709 2.5218 G 5.1045 452.0709 492.0000 153.4317 129 12.8159236907959 88.5623359589247 75.3277 75.0000 9.0416 123 2.5218
1012 561.3333 3.7541 G 7.2295 636.3333 705.0000 276.4469 101 11.3400707244873 88.0187111897054 75.3167 75.0000 8.6791 186 3.7541
1013 31.3243 0.2095 G 1.1945 107.3243 106.0000 12.0001 74 9.70668506622314 89.8466667677935 75.4396 76.0000 9.2311 188 0.2095
1017 29.3043 0.1960 G 1.1975 104.3043 103.0000 13.0257 92 10.8230323791504 87.1001974309586 75.2917 75.0000 8.0668 124 0.1960
1018 136.6087 0.9136 G 2.3973 211.6087 221.0000 52.2568 117 12.2052869796753 88.2700990865491 75.6891 75.0000 8.8467 123 0.9136
1019 159.7262 1.0682 G 2.6106 237.7262 255.0000 61.7875 84 10.3417663574219 91.0616174859475 77.5251 78.0000 8.7077 185 1.0682
1020 25.5938 0.1712 G 1.1558 104.5938 99.0000 24.2756 64 9.02703380584717 90.4972750128284 77.7293 79.0000 7.6648 187 0.1712
1024 9.0526 L 0.9462 85.0526 86.0000 11.4155 38 6.95579624176025 89.8929296588193 76.1910 76.0000 9.2620 184 0.0605
1026 700.4545 4.6845 G 8.5991 776.4545 863.0000 316.8661 123 12.5143299102783 90.2950488704906 76.0583 76.0000 9.5300 124 4.6845
1027 8.2917 L 0.9472 84.2917 83.0000 14.4424 96 11.0558128356934 88.9876445574694 76.2018 76.0000 8.6584 226 0.0555
1030 97.3058 0.6508 G 1.9915 173.3058 173.0000 33.4987 123 12.5143299102783 87.0208844356571 76.2957 76.0000 7.3473 119 0.6508
1031 110.7350 0.7406 G 2.1256 184.7350 187.0000 31.9252 119 12.3091630935669 86.9077538454498 74.4667 74.0000 8.6052 124 0.7406
1034 337.8482 2.2595 G 4.6129 413.8482 432.0000 143.0259 114 12.0477924346924 89.7148094736654 75.9915 76.0000 9.1432 121 2.2595
1039 70.3462 0.4705 G 1.6301 146.3462 149.0000 22.7684 106 11.617374420166 89.7779309942358 76.8403 76.0000 9.1853 123 0.4705
1040 13.9375 0.0932 G 1.0096 89.9375 90.0000 11.0197 48 7.81764030456543 89.0799288966764 76.6209 76.0000 8.7200 188 0.0932

Total number of rows: 36227

Table truncated, full table size 4578 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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