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Sample GSM116247 Query DataSets for GSM116247
Status Public on Mar 23, 2015
Title Fibrosarcoma induced spontaneously in C3H/He mouse, 4 days after gamma irradiation at 30Gy (g_nfsa_30_4d_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 4days after gamma irradiation at 30Gy
Data processing global median normalization
 
Submission date Jun 26, 2006
Last update date Mar 23, 2015
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE15362 Radiation-induced genes expressed in six murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1002 1091.8781 13.4077 G 13.1052 1168.8781 1363.0000 585.4485 125 12.6156625747681 89.1917992219079 76.7333 77.0000 8.1279 124 13.4077
1003 48.5185 0.5958 G 1.3823 126.5185 100.0000 92.5436 54 8.29185962677002 91.5289659892482 77.1209 78.0000 9.0193 188 0.5958
1004 47.3976 0.5820 G 1.3953 123.3976 124.0000 15.0709 83 10.2800235748291 88.4405721697405 77.0055 76.0000 8.2937 188 0.5820
1005 3.6136 L 0.9111 80.6136 80.0000 10.1907 88 10.5851345062256 88.4747671692463 77.4365 77.0000 7.6498 205 0.0444
1006 7.1389 L 0.9359 84.1389 81.0000 12.1796 36 6.7702751159668 89.8972393917576 77.2676 77.0000 8.5982 146 0.0877
1010 303.4050 3.7257 G 4.2203 380.4050 412.0000 117.7280 123 12.5143299102783 90.1360389573706 76.2222 77.0000 8.7574 112 3.7257
1012 626.0111 7.6871 G 7.7035 704.0111 799.0000 312.6723 90 10.7047443389893 91.3884932765854 77.7967 78.0000 8.9257 188 7.6871
1013 33.5493 0.4120 G 1.2211 109.5493 106.0000 12.7961 71 9.50789165496826 89.712984974424 76.3791 76.0000 9.1420 188 0.4120
1017 51.3627 0.6307 G 1.4295 128.3627 129.0000 18.7380 104 11.5072546005249 89.7976986345603 76.6583 77.0000 8.5318 124 0.6307
1018 13.0714 0.1605 G 1.0088 90.0714 91.0000 10.5979 56 8.444016456604 89.2885055511221 77.2265 77.0000 8.1923 187 0.1605
1019 76.5897 0.9405 G 1.7467 152.5897 155.0000 24.0760 78 9.96557521820068 87.3583004429899 76.2912 76.0000 7.5722 188 0.9405
1020 21.8906 0.2688 G 1.1077 100.8906 100.0000 11.7780 64 9.02703380584717 91.0823293812361 77.8242 79.0000 8.0549 188 0.2688
1024 11.0500 L 0.9762 88.0500 90.0000 10.7353 40 7.13649654388428 90.198139489331 77.3077 77.0000 8.7988 162 0.1357
1026 334.1121 4.1027 G 4.6508 411.1121 452.0000 143.5911 118 12.2573356628418 88.3952585298736 76.3698 77.0000 7.5968 123 4.1027
1027 9.8529 L 0.9545 86.8529 86.0000 11.6420 34 6.57952451705933 90.9892766762886 76.8759 77.0000 9.3262 151 0.1210
1030 44.3750 0.5449 G 1.3563 122.3750 122.0000 15.8437 106 11.617374420166 90.2253043542918 77.5055 78.0000 8.1502 93 0.5449
1031 87.9725 1.0803 G 1.8068 165.9725 166.0000 26.6270 111 11.8882122039795 91.8607998250771 77.7500 78.0000 9.2405 124 1.0803
1034 198.6774 2.4397 G 3.0069 276.6774 287.0000 69.8918 93 10.8816947937012 92.0148242545611 77.4709 78.0000 9.3432 178 2.4397
1039 44.1149 0.5417 G 1.3449 120.1149 120.0000 16.6495 87 10.5248203277588 89.3121037739344 76.3408 76.0000 8.8747 185 0.5417
1040 7.7209 L 0.9421 84.7209 85.0000 9.1125 43 7.3992772102356 89.9317155367015 76.4358 77.0000 8.6211 185 0.0948

Total number of rows: 36227

Table truncated, full table size 4524 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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